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L2_038_000M1_scaffold_1181

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Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_1181_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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258..1058
DNA (801bp) protein (267aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWE9_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RNA polymerase sigma factor RpoD
L2_038_000M1_scaffold_1181_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1244..1606
DNA (363bp) protein (121aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWZ4_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
anti-sigma-factor antagonist
L2_038_000M1_scaffold_1181_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1603..2049
DNA (447bp) protein (149aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4C9_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:ERJ96594.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2034..2699
DNA (666bp) protein (222aa)
Putative RNA polymerase sigma-F factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBD0_9FIRM
Putative RNA polymerase sigma-F factor {ECO:0000313|EMBL:ERJ96593.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
sigF; RNA polymerase sigma-F factor
L2_038_000M1_scaffold_1181_5
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3093..3458)
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LCX9_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL17474.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L2_038_000M1_scaffold_1181_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3684..4604
DNA (921bp) protein (307aa)
Hydrolase, NUDIX family (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDK5_9FIRM
Hydrolase, NUDIX family {ECO:0000313|EMBL:ERJ96591.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative pyrophosphatase
L2_038_000M1_scaffold_1181_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4710..5537
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LSN4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90118.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L2_038_000M1_scaffold_1181_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5604..7454
DNA (1851bp) protein (617aa)
Radical SAM domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKV7_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:ERJ90119.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Fe-S oxidoreductase
L2_038_000M1_scaffold_1181_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7451..8110
DNA (660bp) protein (220aa)
Radical SAM-linked protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDD6_9FIRM
Radical SAM-linked protein {ECO:0000313|EMBL:ERJ90120.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L2_038_000M1_scaffold_1181_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8396..8740
DNA (345bp) protein (115aa)
50S ribosomal protein L19 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD08_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LSU ribosomal protein L19P
L2_038_000M1_scaffold_1181_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8917..9558
DNA (642bp) protein (214aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKV9_9FIRM
L2_038_000M1_scaffold_1181_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9650..9775
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93792.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9760..10647
DNA (888bp) protein (296aa)
Ribosome biogenesis GTPase A (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCY5_9FIRM
Ribosome biogenesis GTP-binding protein YlqF {ECO:0000313|EMBL:ERJ90092.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Ras superfamily GTP-binding protein YlqF
L2_038_000M1_scaffold_1181_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10647..11297
DNA (651bp) protein (217aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RNase HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LSL5_9FIRM
L2_038_000M1_scaffold_1181_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11278..11661
DNA (384bp) protein (128aa)
UPF0102 protein RUMCAL_02864 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU0_9FIRM
UPF0102 protein RUMCAL_02864 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
conserved hypothetical protein TIGR00252
L2_038_000M1_scaffold_1181_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11694..13193
DNA (1500bp) protein (500aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDB7_9FIRM
Threonine synthase {ECO:0000313|EMBL:ERJ90095.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13205..13897
DNA (693bp) protein (231aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV12_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:ERJ90096.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted phosphohydrolase
L2_038_000M1_scaffold_1181_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14067..15404
DNA (1338bp) protein (446aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Trigger factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCZ0_9FIRM
trigger factor
L2_038_000M1_scaffold_1181_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15525..16115
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ruminococcus RepID=U2LSL8_9FIRM
L2_038_000M1_scaffold_1181_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16130..17419
DNA (1290bp) protein (430aa)
ATP-dependent Clp protease ATP-binding subunit ClpX (EC:3.4.21.92)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU2_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17527..18213)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90100.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted membrane protein
L2_038_000M1_scaffold_1181_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18210..18800)
DNA (591bp) protein (197aa)
Putative thiamine-phosphate diphosphorylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV16_9FIRM
Putative thiamine-phosphate diphosphorylase {ECO:0000313|EMBL:ERJ90101.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L2_038_000M1_scaffold_1181_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18797..19963)
DNA (1167bp) protein (389aa)
thiH2; 2-iminoacetate synthase ThiH (EC:4.1.99.19)
Thiazole biosynthesis protein ThiH n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCZ4_9FIRM
Thiazole biosynthesis protein ThiH {ECO:0000313|EMBL:ERJ90102.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19976..20755)
DNA (780bp) protein (260aa)
Thiazole synthase {ECO:0000256|HAMAP-Rule:MF_00443}; EC=2.8.1.10 {ECO:0000256|HAMAP-Rule:MF_00443};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Thiazole synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LSM3_9FIRM
thiG; putative thiazole biosynthesis protein ThiG
L2_038_000M1_scaffold_1181_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20795..20995)
DNA (201bp) protein (67aa)
Thiamine biosynthesis protein ThiS n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU5_9FIRM
Thiamine biosynthesis protein ThiS {ECO:0000313|EMBL:ERJ90104.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
sulfur carrier protein ThiS
L2_038_000M1_scaffold_1181_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21161..21937)
DNA (777bp) protein (259aa)
histidinol phosphate phosphatase HisJ family (EC:3.1.3.15)
Histidinol phosphate phosphatase HisJ family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDC4_9FIRM
Histidinol phosphate phosphatase HisJ family protein {ECO:0000313|EMBL:ERJ90105.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21954..22610)
DNA (657bp) protein (219aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ90106.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L2_038_000M1_scaffold_1181_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22869..25496)
DNA (2628bp) protein (876aa)
Transglutaminase-like protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCG5_9FIRM
Transglutaminase-like protein {ECO:0000313|EMBL:ERJ89942.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
transglutaminase domain-containing protein
L2_038_000M1_scaffold_1181_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25493..26620)
DNA (1128bp) protein (376aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LS51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ89943.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L2_038_000M1_scaffold_1181_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26617..27555)
DNA (939bp) protein (313aa)
MoxR-like ATPases (EC:3.6.3.-)
ATPase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKB9_9FIRM
ATPase family protein {ECO:0000313|EMBL:ERJ89944.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying items 1-30 of 45 in total

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