ggKbase home page

L2_038_000M1_scaffold_976

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_976_1
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(372..1253)
DNA (882bp) protein (294aa)
PF10035 family protein n=2 Tax=Acidaminococcus RepID=U2UI85_9FIRM
PF10035 family protein {ECO:0000313|EMBL:ERL17748.1}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
hypothetical protein
L2_038_000M1_scaffold_976_2
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

1511..2377
DNA (867bp) protein (289aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=3 Tax=Acidaminococcus RepID=G4Q3Q3_ACIIR
L2_038_000M1_scaffold_976_3
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

2370..3074
DNA (705bp) protein (235aa)
FCD domain protein n=3 Tax=Acidaminococcus RepID=C0WC37_9FIRM
FCD domain protein {ECO:0000313|EMBL:ERL17793.1}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
transcriptional regulator
L2_038_000M1_scaffold_976_4
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3120..3932
DNA (813bp) protein (271aa)
Pur operon repressor PurR n=3 Tax=Acidaminococcus RepID=C0WC36_9FIRM
Purine operon repressor {ECO:0000313|EMBL:CDB94441.1}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
purine operon repressor
L2_038_000M1_scaffold_976_5
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

3987..5201
DNA (1215bp) protein (405aa)
ilvA; threonine dehydratase (EC:4.3.1.19)
Threonine dehydratase n=5 Tax=Acidaminococcus RepID=G4Q3Q6_ACIIR
Threonine dehydratase {ECO:0000313|EMBL:AEQ21779.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_6
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

5243..6613
DNA (1371bp) protein (457aa)
glmU; UDP-N-acetylglucosamine pyrophosphorylase (EC:2.3.1.157 2.7.7.23)
Bifunctional protein GlmU n=5 Tax=Acidaminococcus RepID=G4Q3Q7_ACIIR
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_7
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

6700..7665
DNA (966bp) protein (322aa)
prsA; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Ribose-phosphate pyrophosphokinase n=5 Tax=Acidaminococcus RepID=G4Q3Q8_ACIIR
L2_038_000M1_scaffold_976_8
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

7671..8345
DNA (675bp) protein (225aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Peptidyl-tRNA hydrolase n=4 Tax=Acidaminococcus RepID=G4Q3Q9_ACIIR
peptidyl-tRNA hydrolase
L2_038_000M1_scaffold_976_9
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8390..9280)
DNA (891bp) protein (297aa)
sdaA; L-serine deaminase (EC:4.3.1.17)
L-serine deaminase n=4 Tax=Acidaminococcus RepID=G4Q3R0_ACIIR
L-serine deaminase {ECO:0000313|EMBL:AEQ21783.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_10
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(9304..9972)
DNA (669bp) protein (223aa)
sdaA; L-serine dehydratase, iron-sulfur-dependent subunit beta (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, beta subunit {ECO:0000313|EMBL:ERL17759.1}; EC=4.3.1.17 {ECO:0000313|EMBL:ERL17759.1};; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=3 Tax=Acidaminococcus RepID=G4Q3R1_ACIIR
L2_038_000M1_scaffold_976_11
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(10080..11270)
DNA (1191bp) protein (397aa)
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=4 Tax=Acidaminococcus RepID=C0WC30_9FIRM
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein {ECO:0000313|EMBL:ERL17778.1}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
sodium-dicarboxylate symporter
L2_038_000M1_scaffold_976_12
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

11442..12323
DNA (882bp) protein (294aa)
Transcriptional regulator n=2 Tax=Acidaminococcus RepID=G4Q3R3_ACIIR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AEQ21786.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_13
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists


12429..12635
DNA (207bp) protein (69aa)
50S ribosomal protein L31 n=5 Tax=Acidaminococcus RepID=G4Q3R4_ACIIR
rpmE; 50S ribosomal protein L31
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_14
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

12696..13577
DNA (882bp) protein (294aa)
Uncharacterized protein n=4 Tax=Acidaminococcus RepID=C0WC27_9FIRM
putative metal-dependent enzyme
Putative metal-dependent enzyme {ECO:0000313|EMBL:AEQ21788.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_15
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

13592..14671
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=3 Tax=Acidaminococcus RepID=G4Q3R6_ACIIR
peptide chain release factor
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_16
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

14671..15564
DNA (894bp) protein (298aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
Release factor glutamine methyltransferase n=5 Tax=Acidaminococcus RepID=G4Q3R7_ACIIR
modification methylase
L2_038_000M1_scaffold_976_17
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

15533..16648
DNA (1116bp) protein (372aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
Sua5/YciO/YrdC/YwlC family protein n=4 Tax=Acidaminococcus RepID=S2Z800_9FIRM
Putative translation factor (SUA5)
L2_038_000M1_scaffold_976_18
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

16904..17341
DNA (438bp) protein (146aa)
rpiB; ribose-5-phosphate isomerase B (EC:5.3.1.6)
Ribose-5-phosphate isomerase B n=5 Tax=Acidaminococcus RepID=G4Q3S0_ACIIR
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:AEQ21793.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_19
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17356..17913
DNA (558bp) protein (186aa)
UPF0340 protein Acin_0554 n=4 Tax=Acidaminococcus RepID=G4Q3S1_ACIIR
hypothetical protein
UPF0340 protein BN610_00470 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
L2_038_000M1_scaffold_976_20
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

17974..18600
DNA (627bp) protein (209aa)
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
Uracil phosphoribosyltransferase n=5 Tax=Acidaminococcus RepID=G4Q3S2_ACIIR
L2_038_000M1_scaffold_976_21
Acidaminococcus sp. D21, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

18604..19065
DNA (462bp) protein (154aa)
comEB; dCMP deaminase (EC:3.5.4.12)
dCMP deaminase n=5 Tax=Acidaminococcus RepID=G4Q3S3_ACIIR
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:EEH90652.1}; TaxID=563191 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. D21.;"
L2_038_000M1_scaffold_976_22
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19719..20582)
DNA (864bp) protein (288aa)
Uncharacterized protein n=4 Tax=Acidaminococcus RepID=G4Q3S5_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ21798.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_23
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

20838..21824
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Acidaminococcus intestini (strain RyC-MR95) RepID=G4Q3S6_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB94498.1}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
L2_038_000M1_scaffold_976_24
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

21845..22921
DNA (1077bp) protein (359aa)
ttuC; tartrate dehydrogenase (EC:1.1.1.83 1.1.1.93 4.1.1.73)
Tartrate dehydrogenase n=4 Tax=Acidaminococcus RepID=G4Q3S7_ACIIR
Tartrate dehydrogenase {ECO:0000313|EMBL:AEQ21800.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_25
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23018..23605
DNA (588bp) protein (196aa)
Chorismate mutase n=3 Tax=Acidaminococcus RepID=U2TY18_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ21801.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_26
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

23602..25059
DNA (1458bp) protein (486aa)
Uncharacterized protein n=4 Tax=Acidaminococcus RepID=G4Q3S9_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEQ21802.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_038_000M1_scaffold_976_27
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(25123..25506)
DNA (384bp) protein (128aa)
Uncharacterized protein n=3 Tax=Acidaminococcus RepID=G4Q3T0_ACIIR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB94510.1}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
L2_038_000M1_scaffold_976_28
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25836..25919
DNA (84bp) protein (28aa)
UspA domain protein n=4 Tax=Acidaminococcus RepID=G4Q3T1_ACIIR
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:CDB94511.1}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
Displaying 28 items

View Taxonomy