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L2_038_000M1_scaffold_1010

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_038_000M1_scaffold_1010_1
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(96..1769)
DNA (1674bp) protein (558aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HKG5_9FIRM
L2_038_000M1_scaffold_1010_2
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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2154..5831
DNA (3678bp) protein (1226aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GUY2_9FIRM
L2_038_000M1_scaffold_1010_3
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5853..9626
DNA (3774bp) protein (1258aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HGF7_9FIRM
L2_038_000M1_scaffold_1010_4
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9747..10412)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CV96_9CLOT
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L2_038_000M1_scaffold_1010_5
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10619..12112)
DNA (1494bp) protein (498aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|SAAS:SAAS00276926};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GTK0_9FIRM
murE2; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase
L2_038_000M1_scaffold_1010_6
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12135..13670)
DNA (1536bp) protein (512aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GKR5_9FIRM
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:CDB25020.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative ABC transporter substrate-binding protein
L2_038_000M1_scaffold_1010_7
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13685..14479)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GUU9_9FIRM
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L2_038_000M1_scaffold_1010_8
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14494..17232)
DNA (2739bp) protein (913aa)
Protein translocase subunit SecA n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6HGC7_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
secA; preprotein translocase SecA subunit
L2_038_000M1_scaffold_1010_9
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17406..18758)
DNA (1353bp) protein (451aa)
serine protease (EC:3.4.21.-)
Serine protease n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GQR8_9FIRM
Serine protease {ECO:0000313|EMBL:CDB27763.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L2_038_000M1_scaffold_1010_10
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18773..20242)
DNA (1470bp) protein (490aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
putative two-component histidine kinase (EC:2.7.13.3)
Putative two-component histidine kinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H1B6_9FIRM
L2_038_000M1_scaffold_1010_11
Firmicutes bacterium CAG:83, Firmicutes, Bacteria

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comp(20239..20919)
DNA (681bp) protein (227aa)
OmpR family two-component response regulator n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5CXJ8_9FIRM
OmpR family two-component response regulator {ECO:0000313|EMBL:CCX72595.1}; TaxID=1262992 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:83.;"
OmpR family two-component response regulator
L2_038_000M1_scaffold_1010_12
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21070..22233)
DNA (1164bp) protein (388aa)
Cysteine desulfurase family protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2N4_9FIRM
Cysteine desulfurase family protein {ECO:0000313|EMBL:EDM97434.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
cysteine desulfurase
L2_038_000M1_scaffold_1010_13
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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22351..23436
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6P2N2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM97432.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
membrane protein
L2_038_000M1_scaffold_1010_14
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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23449..23655
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Phascolarctobacterium succinatutens CAG:287 RepID=R6X101_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD12844.1}; TaxID=1263101 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens CAG:287.;"
Predicted redox protein, regulator of disulfide bond formation
L2_038_000M1_scaffold_1010_15
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

Not on your lists

23652..23897
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LL54_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88173.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Protein of unknown function (DUF3343).
L2_038_000M1_scaffold_1010_16
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23900..24937
DNA (1038bp) protein (346aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
selenophosphate synthase (EC:2.7.9.3)
Selenide, water dikinase n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H0J4_9FIRM
L2_038_000M1_scaffold_1010_17
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25137..26168)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H189_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27739.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
hypothetical protein
L2_038_000M1_scaffold_1010_18
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26182..27414)
DNA (1233bp) protein (411aa)
Malate/lactate dehydrogenases (EC:1.1.1.27)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6GTI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27740.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
L2_038_000M1_scaffold_1010_19
Oscillibacter sp. CAG:241, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27427..32160)
DNA (4734bp) protein (1578aa)
Uncharacterized protein n=1 Tax=Oscillibacter sp. CAG:241 RepID=R6H2L9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB27741.1}; TaxID=1262911 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter; environmental samples.;" source="Oscillibacter sp. CAG:241.;"
cytidyltransferase-related domain
Displaying 19 items

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