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L2_039_000G1_scaffold_268

Search features with annotation key words

Displaying items 1-30 of 82 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000G1_scaffold_268_1
unknown

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1..144
DNA (144bp) protein (48aa)

This feature has no annotations

L2_039_000G1_scaffold_268_2
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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884..1237
DNA (354bp) protein (118aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y4I1_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDD30863.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
toxin-antitoxin system
L2_039_000G1_scaffold_268_3
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1234..2886
DNA (1653bp) protein (551aa)
Resolvase, N-terminal domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EDW1_9CLOT
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEG30309.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Site-specific recombinases, DNA invertase Pin homologs
L2_039_000G1_scaffold_268_4
Firmicutes bacterium CAG:129, Firmicutes, Bacteria

Not on your lists

3034..4149
DNA (1116bp) protein (372aa)
Antirepressor regulating drug resistance protein n=1 Tax=Firmicutes bacterium CAG:129 RepID=R5SP75_9FIRM
Antirepressor regulating drug resistance protein {ECO:0000313|EMBL:CCZ46762.1}; TaxID=1263003 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:129.;"
L2_039_000G1_scaffold_268_5
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

5201..5875
DNA (675bp) protein (225aa)
transcriptional regulator n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5C999
Uncharacterized protein {ECO:0000313|EMBL:CCX91504.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
OmpR family two-component response regulator
L2_039_000G1_scaffold_268_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5872..7086
DNA (1215bp) protein (405aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative two-component histidine kinase (EC:2.7.13.3)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYG3_9FIRM
L2_039_000G1_scaffold_268_7
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7257..8252
DNA (996bp) protein (332aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D0I5_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA78719.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
ABC-type multidrug transport system, ATPase component
L2_039_000G1_scaffold_268_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8249..9112
DNA (864bp) protein (288aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL64722.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L2_039_000G1_scaffold_268_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9112..10581
DNA (1470bp) protein (490aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RYG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41344.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type uncharacterized transport system.
L2_039_000G1_scaffold_268_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10568..11983
DNA (1416bp) protein (472aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NSI9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41343.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L2_039_000G1_scaffold_268_11
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

comp(12563..13231)
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5F0R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX93871.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
Cyclic nucleotide-binding domain.
L2_039_000G1_scaffold_268_12
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13353..14924
DNA (1572bp) protein (524aa)
Hydroxylamine reductase {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00038686}; EC=1.7.99.1 {ECO:0000256|HAMAP-Rule:MF_00069, ECO:0000256|SAAS:SAAS00150119};; Hybrid-cluster protein {ECO:0000256|HAMAP-Rule:MF_00069}; Prismane protein {ECO:0000256|HAMAP-Rule:MF_00069}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hydroxylamine reductase (EC:1.7.-.-)
Hydroxylamine reductase n=1 Tax=Eubacterium sp. CAG:38 RepID=R7H7J8_9FIRM
L2_039_000G1_scaffold_268_13
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15161..17071
DNA (1911bp) protein (637aa)
butyryl-CoA dehydrogenase (EC:1.3.8.1)
Rubredoxin n=2 Tax=Oscillibacter RepID=U2QDB9_9FIRM
Rubredoxin {ECO:0000313|EMBL:ERK63277.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L2_039_000G1_scaffold_268_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17093..18304
DNA (1212bp) protein (404aa)
Metallo-beta-lactamase domain protein n=2 Tax=Oscillibacter RepID=U2QWD8_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:ERK63278.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
Uncharacterized flavoproteins
L2_039_000G1_scaffold_268_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18382..18516)
DNA (135bp) protein (45aa)
Uncharacterized protein (Fragment) n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZNP2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ05205.1}; Flags: Fragment;; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L2_039_000G1_scaffold_268_16
unknown

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comp(18538..18837)
DNA (300bp) protein (100aa)

This feature has no annotations

L2_039_000G1_scaffold_268_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19164..19580)
DNA (417bp) protein (139aa)
Transcriptional regulator, MarR family n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SRK5_CLOSY
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ERI80070.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L2_039_000G1_scaffold_268_18
unknown

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comp(19547..19825)
DNA (279bp) protein (93aa)

This feature has no annotations

L2_039_000G1_scaffold_268_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19896..20858)
DNA (963bp) protein (321aa)
LysR substrate binding domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMF3_9FIRM
LysR substrate binding domain protein {ECO:0000313|EMBL:EHM54206.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
ywbI; transcriptional regulator-like protein (LysR family)
L2_039_000G1_scaffold_268_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21220..22779
DNA (1560bp) protein (520aa)
Acetate CoA-transferase YdiF {ECO:0000256|PIRNR:PIRNR000858}; EC=2.8.3.8 {ECO:0000256|PIRNR:PIRNR000858};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Acetate CoA-transferase YdiF n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YMF2_9FIRM
coenzyme A transferase
L2_039_000G1_scaffold_268_21
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22857..24200
DNA (1344bp) protein (448aa)
Citrate transporter n=3 Tax=Clostridiales RepID=G9YMF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF56874.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L2_039_000G1_scaffold_268_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24357..24767
DNA (411bp) protein (137aa)
MaoC-like protein n=2 Tax=Clostridiales RepID=G9YMF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO33182.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
dehydratase
L2_039_000G1_scaffold_268_23
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24928..25791)
DNA (864bp) protein (288aa)
Transcriptional regulator, DeoR family n=1 Tax=Spirochaeta coccoides (strain ATCC BAA-1237 / DSM 17374 / SPN1) RepID=F4GJ43_SPICD
DeoR family transcriptional regulator
Tax=BJP_IG2102_Clostridiales_34_350
L2_039_000G1_scaffold_268_24
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25901..26746
DNA (846bp) protein (282aa)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C7W4_9CLOT
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:ERI65352.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
transketolase
L2_039_000G1_scaffold_268_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26748..27695
DNA (948bp) protein (316aa)
putative transketolase C-terminal section (EC:2.2.1.1)
Transketolase, pyridine binding domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CDB2_9CLOT
Transketolase, pyridine binding domain protein {ECO:0000313|EMBL:ERI65351.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L2_039_000G1_scaffold_268_26
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27757..28494
DNA (738bp) protein (246aa)
Peptidase, M56 family n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW54_9FIRM
Peptidase, M56 family {ECO:0000313|EMBL:EDM99711.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L2_039_000G1_scaffold_268_27
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28526..29515
DNA (990bp) protein (330aa)
Lipoate--protein ligase {ECO:0000256|SAAS:SAAS00026637}; EC=2.7.7.63 {ECO:0000256|SAAS:SAAS00026637};; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Lipoyltransferase and lipoate-protein ligase n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MD36_9FIRM
lipoate-protein ligase
L2_039_000G1_scaffold_268_28
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29655..31040
DNA (1386bp) protein (462aa)
MATE efflux family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJ16_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEG28481.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
MATE efflux family protein
L2_039_000G1_scaffold_268_29
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31193..31774
DNA (582bp) protein (194aa)
Sigma-70 region 2 n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D671_9CLOT
Sigma-70 region 2 {ECO:0000313|EMBL:EEG53162.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
putative RNA polymerase sigma factor 70
L2_039_000G1_scaffold_268_30
Ectocarpus siliculosus, Ectocarpus, Ectocarpales, Phaeophyceae, Eukaryota

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31771..32718
DNA (948bp) protein (316aa)
Putative uncharacterized protein n=1 Tax=Synechococcus sp. (strain JA-2-3B'a(2-13)) RepID=Q2JQ30_SYNJB
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:CBN78050.1}; TaxID=2880 species="Eukaryota; Stramenopiles; PX clade; Phaeophyceae; Ectocarpales; Ectocarpaceae; Ectocarpus.;" source="Ectocarpus siliculosus (Brown alga).;"
Displaying items 1-30 of 82 in total

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