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L2_039_000M1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 155 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_2_1
Acidaminococcus intestini CAG:325, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1..2094)
DNA (2094bp) protein (698aa)
Putative S-layer y domain protein n=1 Tax=Acidaminococcus intestini CAG:325 RepID=R6LZS6_9FIRM
Putative S-layer y domain protein {ECO:0000313|EMBL:CDB92878.1}; TaxID=1263033 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus; environmental samples.;" source="Acidaminococcus intestini CAG:325.;"
putative S-layer y domain-containing protein
L2_039_000M1_scaffold_2_2
unknown

Not on your lists

comp(2194..2283)
DNA (90bp) protein (30aa)

This feature has no annotations

L2_039_000M1_scaffold_2_3
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(2392..4830)
DNA (2439bp) protein (813aa)
S-layer domain protein n=1 Tax=Acidaminococcus intestini (strain RyC-MR95) RepID=G4Q4G7_ACIIR
S-layer protein
S-layer domain protein {ECO:0000313|EMBL:AEQ23152.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_039_000M1_scaffold_2_4
Acidaminococcus intestini, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(4911..6485)
DNA (1575bp) protein (525aa)
Site-specific recombinase n=1 Tax=Acidaminococcus intestini (strain RyC-MR95) RepID=G4Q4G8_ACIIR
site-specific recombinase
Site-specific recombinase {ECO:0000313|EMBL:AEQ23153.1}; TaxID=568816 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus intestini (strain RyC-MR95).;"
L2_039_000M1_scaffold_2_5
Phascolarctobacterium succinatutens, Phascolarctobacterium, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(6470..8242)
DNA (1773bp) protein (591aa)
Resolvase, N-terminal domain protein n=1 Tax=Phascolarctobacterium succinatutens YIT 12067 RepID=E8LGL6_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EFY04018.1}; TaxID=626939 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Phascolarctobacterium.;" source="Phascolarctobacterium succinatutens YIT 12067.;"
site-specific recombinase
L2_039_000M1_scaffold_2_6
Megasphaera sp. BV3C16-1, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

8451..8921
DNA (471bp) protein (157aa)
PF10088 family protein n=1 Tax=Megasphaera sp. BV3C16-1 RepID=U7UG49_9FIRM
PF10088 family protein {ECO:0000313|EMBL:ERT57854.1}; TaxID=1111454 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. BV3C16-1.;"
L2_039_000M1_scaffold_2_7
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8985..9836)
DNA (852bp) protein (284aa)
Type II site-specific deoxyribonuclease n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7ID58_9FIRM
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:CDE49228.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
type II site-specific deoxyribonuclease
L2_039_000M1_scaffold_2_8
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9833..10612)
DNA (780bp) protein (260aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
DNA methyltransferase n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B2EC78
adenine-specific DNA-methyltransferase
L2_039_000M1_scaffold_2_9
Bifidobacterium dentium, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(10615..11454)
DNA (840bp) protein (280aa)
Modification methylase DpnIIA {ECO:0000313|EMBL:EFM40571.1}; EC=2.1.1.72 {ECO:0000313|EMBL:EFM40571.1};; TaxID=871562 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium dentium ATCC 27679.;"
DNA adenine methylase n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B30C12
adenine-specific DNA methyltransferase
L2_039_000M1_scaffold_2_10
Streptococcus sp. GMD4S, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11533..12063)
DNA (531bp) protein (177aa)
DNA adenine methylase n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B55714
DNA adenine methylase {ECO:0000313|EMBL:EKA02753.1}; TaxID=1169673 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. GMD4S.;"
DNA adenine methylase
L2_039_000M1_scaffold_2_11
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12080..12604)
DNA (525bp) protein (175aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B6FBF1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK89471.1}; TaxID=657318 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale DSM 17629.;"
L2_039_000M1_scaffold_2_12
Selenomonas sputigena, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(12607..13089)
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B6131D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEX77804.1}; TaxID=546271 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sputigena (strain ATCC 35185 / DSM 20758 / VPI D19B-28).;"
L2_039_000M1_scaffold_2_13
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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comp(13105..13323)
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TI07_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDC73033.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
Cro/CI family transcriptional regulator
L2_039_000M1_scaffold_2_14
Clostridium bolteae CAG:59, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13339..13995)
DNA (657bp) protein (219aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B564A5
Uncharacterized protein {ECO:0000313|EMBL:CCY00102.1}; TaxID=1263064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bolteae CAG:59.;"
hypothetical protein
L2_039_000M1_scaffold_2_15
Coprococcus eutactus CAG:665, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14118..14321)
DNA (204bp) protein (68aa)
XRE family transcriptional regulator n=1 Tax=Coprococcus eutactus CAG:665 RepID=R5WJI4_9FIRM
XRE family transcriptional regulator
XRE family transcriptional regulator {ECO:0000313|EMBL:CCZ92642.1}; TaxID=1263071 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus eutactus CAG:665.;"
L2_039_000M1_scaffold_2_16
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14336..16630)
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6DMT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79202.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L2_039_000M1_scaffold_2_17
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16643..17290)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6D4W9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA79201.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L2_039_000M1_scaffold_2_18
Selenomonas sp. CM52, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(17302..17868)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Selenomonas sp. CM52 RepID=J5UZW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJU26364.1}; TaxID=936381 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. CM52.;"
hypothetical protein
L2_039_000M1_scaffold_2_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18318..18911
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Succinivibrionaceae bacterium WG-1 RepID=UPI0002556029
Uncharacterized protein {ECO:0000313|EMBL:EDY32042.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L2_039_000M1_scaffold_2_20
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(19151..20542)
DNA (1392bp) protein (464aa)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLP1_MEGEL
23S rRNA (uracil-5-)-methyltransferase RumA
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:CCC74239.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L2_039_000M1_scaffold_2_21
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(20558..21862)
DNA (1305bp) protein (435aa)
Pyrimidine-nucleoside phosphorylase n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VLP2_MEGEL
pyrimidine-nucleoside phosphorylase
Pyrimidine-nucleoside phosphorylase {ECO:0000313|EMBL:CCC74240.1}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
L2_039_000M1_scaffold_2_22
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(21867..23045)
DNA (1179bp) protein (393aa)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Phosphopentomutase n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MWF4_9FIRM
phosphopentomutase
L2_039_000M1_scaffold_2_23
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(23262..24542)
DNA (1281bp) protein (427aa)
Chaperone protein DnaJ n=2 Tax=Megasphaera RepID=S7HIG8_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
molecular chaperone DnaJ
L2_039_000M1_scaffold_2_24
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(24565..26427)
DNA (1863bp) protein (621aa)
Chaperone protein DnaK n=1 Tax=Megasphaera elsdenii DSM 20460 RepID=G0VQE6_MEGEL
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332, ECO:0000313|EMBL:CCC73674.1}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1064535 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii DSM 20460.;"
molecular chaperone DnaK
L2_039_000M1_scaffold_2_25
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(26462..27073)
DNA (612bp) protein (204aa)
Protein GrpE n=2 Tax=Megasphaera RepID=S7HS19_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
protein grpE
L2_039_000M1_scaffold_2_26
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(27089..28129)
DNA (1041bp) protein (347aa)
Heat-inducible transcription repressor hrcA n=2 Tax=Megasphaera RepID=G0VQE4_MEGEL
heat-inducible transcription repressor hrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L2_039_000M1_scaffold_2_27
Megasphaera elsdenii, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(28311..29813)
DNA (1503bp) protein (501aa)
Fe-only hydrogenase n=2 Tax=Megasphaera elsdenii RepID=G0VQK2_MEGEL
fe-only hydrogenase
Fe-only hydrogenase {ECO:0000313|EMBL:AAF22114.1}; TaxID=907 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera elsdenii.;"
L2_039_000M1_scaffold_2_28
Veillonella ratti, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

30344..31174
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Veillonella ratti ACS-216-V-Col6b RepID=K9DI58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKU78467.1}; TaxID=883156 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella ratti ACS-216-V-Col6b.;"
L2_039_000M1_scaffold_2_29
Megasphaera sp. NM10, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(31262..32131)
DNA (870bp) protein (290aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1273103 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera.;" source="Megasphaera sp. NM10.;"
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Megasphaera RepID=S7HGT3_9FIRM
phosphoribosylaminoimidazole-succinocarboxamide synthase
L2_039_000M1_scaffold_2_30
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(32229..33611)
DNA (1383bp) protein (461aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
Fumarate hydratase class II n=1 Tax=Megasphaera elsdenii CAG:570 RepID=R7MWS9_9FIRM
fumarate hydratase
Displaying items 1-30 of 155 in total

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