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L2_039_000M1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 122 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_17_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(415..1254)
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H6Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU96320.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phage DNA replication protein (predicted replicative helicase loader)
L2_039_000M1_scaffold_17_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1251..1991)
DNA (741bp) protein (247aa)
Phage replisome organizer N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H6Y9_9FIRM
Phage replisome organizer N-terminal domain protein {ECO:0000313|EMBL:EEU96319.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
phage protein
L2_039_000M1_scaffold_17_3
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2008..2217
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VFZ8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO57425.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
L2_039_000M1_scaffold_17_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2350..3969)
DNA (1620bp) protein (540aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZN33_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EFQ05413.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L2_039_000M1_scaffold_17_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4383..4835
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S638_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP23130.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L2_039_000M1_scaffold_17_6
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4780..5190)
DNA (411bp) protein (137aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGX69366.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L2_039_000M1_scaffold_17_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5423..5881)
DNA (459bp) protein (153aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=11 Tax=root RepID=D4JBN6_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Uncharacterized protein {ECO:0000313|EMBL:ETD23789.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L2_039_000M1_scaffold_17_8

Not on your lists

comp(6040..6744)
DNA (705bp) protein (235aa)
Uncharacterized protein n=2 Tax=root RepID=E2ZN28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EKC46697.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_039_000M1_scaffold_17_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6737..7249)
DNA (513bp) protein (171aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Eubacterium siraeum 70/3 RepID=D4JS13_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO31574.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
RNA polymerase sigma factor, sigma-70 family
L2_039_000M1_scaffold_17_10
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7432..8133
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NAR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09183.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
transcriptional regulator, AraC family
L2_039_000M1_scaffold_17_11
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8221..8790)
DNA (570bp) protein (190aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JXP0_9FIRM
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CDB65995.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L2_039_000M1_scaffold_17_12
Eubacterium sp. CAG:161, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8765..8995)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:161 RepID=R5KUN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY70508.1}; TaxID=1262881 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:161.;"
hypothetical protein
L2_039_000M1_scaffold_17_13
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9168..9572)
DNA (405bp) protein (135aa)
30S ribosomal protein S9 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9N1_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rpsI; 30S ribosomal protein S9
L2_039_000M1_scaffold_17_14
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9604..10032)
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9T6_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rplM; 50S ribosomal protein L13
L2_039_000M1_scaffold_17_15
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10348..11085)
DNA (738bp) protein (246aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
tRNA pseudouridine synthase A n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N5X9_9FIRM
tRNA-pseudouridine synthase I
L2_039_000M1_scaffold_17_16
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11369..12172)
DNA (804bp) protein (268aa)
Cobalt/nickel transport system permease protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N7W8_9FIRM
Cobalt/nickel transport system permease protein {ECO:0000313|EMBL:CDF08840.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
cobalt/nickel transport system permease
L2_039_000M1_scaffold_17_17
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12205..13113)
DNA (909bp) protein (303aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Cobalt/nickel transport system ATP-binding protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N867_9FIRM
cobalt/nickel transport system ATP-binding protein
L2_039_000M1_scaffold_17_18
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13116..14000)
DNA (885bp) protein (295aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Cobalt/nickel transport system ATP-binding protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9N8_9FIRM
cobalt/nickel transport system ATP-binding protein
L2_039_000M1_scaffold_17_19
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(14235..14771)
DNA (537bp) protein (179aa)
50S ribosomal protein L17 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9T9_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rplQ; 50S ribosomal protein L17
L2_039_000M1_scaffold_17_20
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14865..15833)
DNA (969bp) protein (323aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
DNA-directed RNA polymerase subunit alpha n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N5Y4_9FIRM
DNA-directed RNA polymerase subunit alpha
L2_039_000M1_scaffold_17_21
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(15984..16577)
DNA (594bp) protein (198aa)
30S ribosomal protein S4 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N7X1_9FIRM
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
30S ribosomal protein S4
L2_039_000M1_scaffold_17_22
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16598..16993)
DNA (396bp) protein (132aa)
30S ribosomal protein S11 n=2 Tax=environmental samples RepID=R7HDY1_9FIRM
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
30S ribosomal protein S11
L2_039_000M1_scaffold_17_23
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(17033..17407)
DNA (375bp) protein (125aa)
30S ribosomal protein S13 n=2 Tax=environmental samples RepID=R6K7J8_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rpsM; 30S ribosomal protein S13
L2_039_000M1_scaffold_17_24
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17964..18182)
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=4 Tax=Eubacterium RepID=C4Z2V3_EUBE2
translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
L2_039_000M1_scaffold_17_25
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18216..18479)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N5Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF08849.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
hypothetical protein
L2_039_000M1_scaffold_17_26
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18500..19255)
DNA (756bp) protein (252aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974};; Peptidase M {ECO:0000256|HAMAP-Rule:MF_01974}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Methionine aminopeptidase n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N7X5_9FIRM
methionine aminopeptidase
L2_039_000M1_scaffold_17_27
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19263..19907)
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Adenylate kinase n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N877_9FIRM
adk; adenylate kinase
L2_039_000M1_scaffold_17_28
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(19986..21305)
DNA (1320bp) protein (440aa)
Protein translocase subunit SecY n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9P8_9FIRM
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
preprotein translocase subunit SecY
L2_039_000M1_scaffold_17_29
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21307..21747)
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9U7_9FIRM
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rplO; 50S ribosomal protein L15
L2_039_000M1_scaffold_17_30
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(21776..21961)
DNA (186bp) protein (62aa)
50S ribosomal protein L30 n=2 Tax=environmental samples RepID=R6KAK9_9FIRM
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
rpmD; 50S ribosomal protein L30
Displaying items 1-30 of 122 in total

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