ggKbase home page

L2_039_000M1_scaffold_231

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_231_1
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(304..1047)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JL90_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62070.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
negative regulator of genetic competence
L2_039_000M1_scaffold_231_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1261..2694
DNA (1434bp) protein (478aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBY0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39550.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
serine/threonine protein kinase
L2_039_000M1_scaffold_231_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2667..3263
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IS74_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39551.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_039_000M1_scaffold_231_4
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3397..3654
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EF86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ58874.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L2_039_000M1_scaffold_231_5
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3878..5563
DNA (1686bp) protein (562aa)
SH3 domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EF85_9FIRM
SH3 domain protein {ECO:0000313|EMBL:EEQ58873.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Predicted glycosyl hydrolase
L2_039_000M1_scaffold_231_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5606..7099
DNA (1494bp) protein (498aa)
Serine/threonine protein phosphatase family protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGY7_9CLOT
Serine/threonine protein phosphatase family protein {ECO:0000313|EMBL:CCY39554.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
metallophosphoesterase
L2_039_000M1_scaffold_231_7
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7196..7921
DNA (726bp) protein (242aa)
N-acetylmuramoyl-L-alanine amidase CwlD n=10 Tax=Clostridium RepID=N9WM20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB61003.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
cell wall hydrolase/autolysin
L2_039_000M1_scaffold_231_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7961..8863
DNA (903bp) protein (301aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RSC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP16502.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L2_039_000M1_scaffold_231_9
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9254..10636)
DNA (1383bp) protein (461aa)
RNA polymerase sigma-54 factor n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMM2_9CLOT
RNA polymerase sigma-54 factor {ECO:0000313|EMBL:KJJ71678.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
RNA polymerase sigma-54 factor
L2_039_000M1_scaffold_231_10
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10758..11621)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ELZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ58864.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L2_039_000M1_scaffold_231_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11912..13165
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IBY6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39560.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
peptidase M20
L2_039_000M1_scaffold_231_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13246..14166
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQ64_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44353.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
dTDP-glucose pyrophosphorylase
L2_039_000M1_scaffold_231_13
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14257..14856
DNA (600bp) protein (200aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMP1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97317.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
sporulation protein YyaC
L2_039_000M1_scaffold_231_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15033..16172
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44355.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
peptidoglycan-binding lysin domain-containing protein
L2_039_000M1_scaffold_231_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16242..17531
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J5Q0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44356.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_039_000M1_scaffold_231_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17568..18512
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J608_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44357.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ROK family glucokinase
L2_039_000M1_scaffold_231_17
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18662..19915)
DNA (1254bp) protein (418aa)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen (EC:3.6.1.-)
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6P9Z8_9FIRM
Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen {ECO:0000313|EMBL:CDC17509.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L2_039_000M1_scaffold_231_18
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20027..21037)
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQ68_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44358.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Putative cell wall binding repeat.
L2_039_000M1_scaffold_231_19
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21138..22544)
DNA (1407bp) protein (469aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
Two-component system integral membrane sensor signal transduction histidine kinase n=8 Tax=Clostridium RepID=N9VWG0_9CLOT
integral membrane sensor signal transduction histidine kinase
L2_039_000M1_scaffold_231_20
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22549..23259)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IQF2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44360.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
winged helix family two component transcriptional regulator
L2_039_000M1_scaffold_231_21
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23283..25790)
DNA (2508bp) protein (836aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
Endonuclease MutS2 n=1 Tax=Clostridium bolteae 90B8 RepID=R0AL89_9CLOT
MutS2 family protein
L2_039_000M1_scaffold_231_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25961..27283
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW50_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44554.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
PDZ/DHR/GLGF domain-containing protein
L2_039_000M1_scaffold_231_23
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27348..28292
DNA (945bp) protein (315aa)
Uncharacterized protein n=7 Tax=Clostridium RepID=A8RPU1_9CLOT
CMP-binding protein {ECO:0000313|EMBL:ENZ37121.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
metal dependent phosphohydrolase
L2_039_000M1_scaffold_231_24
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28298..29659
DNA (1362bp) protein (454aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EEQ58836.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEQ58836.1};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ELW2_9FIRM
L2_039_000M1_scaffold_231_25
Bacteroides sp. CAG:661, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

29666..30460
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. CAG:661 RepID=R5STU2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ48337.1}; TaxID=1262746 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides sp. CAG:661.;"
DNA-binding protein
L2_039_000M1_scaffold_231_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30766..31977)
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IMU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41619.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L2_039_000M1_scaffold_231_27
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32217..32756
DNA (540bp) protein (180aa)
GTP pyrophosphokinase rsh {ECO:0000313|EMBL:KJJ70250.1}; EC=2.7.6.5 {ECO:0000313|EMBL:KJJ70250.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HI44_9CLOT
metal dependent phosphohydrolase
L2_039_000M1_scaffold_231_28
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32837..34219
DNA (1383bp) protein (461aa)
Polysaccharide deacetylase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAY4_9CLOT
Polysaccharide deacetylase {ECO:0000313|EMBL:EEG51499.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Predicted xylanase/chitin deacetylase
L2_039_000M1_scaffold_231_29
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34487..35482
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ES95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ60889.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L2_039_000M1_scaffold_231_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35604..36452
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IHK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41623.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Displaying items 1-30 of 31 in total

View Taxonomy