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L2_039_000M1_scaffold_396

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_396_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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88..573
DNA (486bp) protein (162aa)
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Methionine-tRNA ligase, beta subunit n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YEU4_9FIRM
Methionine-tRNA ligase, beta subunit {ECO:0000313|EMBL:EPD55957.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L2_039_000M1_scaffold_396_2
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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736..1005
DNA (270bp) protein (90aa)
Predicted ATPase n=2 Tax=Eubacterium rectale RepID=D6E398_9FIRM
Predicted ATPase
Uncharacterized protein {ECO:0000313|EMBL:ACR76777.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_039_000M1_scaffold_396_3
Clostridium sp. CAG:264, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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983..1750
DNA (768bp) protein (256aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VEH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY61834.1}; TaxID=1262786 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:264.;"
L2_039_000M1_scaffold_396_4
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1788..2354
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DIY4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75876.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L2_039_000M1_scaffold_396_5
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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2492..2791
DNA (300bp) protein (100aa)
Helix-turn-helix n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6R0L3_9FIRM
Helix-turn-helix {ECO:0000313|EMBL:CDC36646.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
Helix-turn-helix.
L2_039_000M1_scaffold_396_6
Eubacterium sp. CAG:146, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2793..3353
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:146 RepID=R5GL69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY13507.1}; TaxID=1262879 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:146.;"
hypothetical protein
L2_039_000M1_scaffold_396_7

Not on your lists

3610..3936
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SWA3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC59609.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L2_039_000M1_scaffold_396_8
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4095..5285
DNA (1191bp) protein (397aa)
Transporter, CPA2 family n=2 Tax=Clostridiales RepID=A5ZQN6_9FIRM
Transporter, CPA2 family {ECO:0000313|EMBL:EDM87893.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
sodium/proton antiporter, CPA1 family (TC 2.A.36)
L2_039_000M1_scaffold_396_9
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5329..6072
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WQX7_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDR45652.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
hypothetical protein
L2_039_000M1_scaffold_396_10
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6233..7123
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RT31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC46261.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L2_039_000M1_scaffold_396_11
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7247..10762
DNA (3516bp) protein (1172aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QC02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26108.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
alkaline phosphatase-like protein
L2_039_000M1_scaffold_396_12
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10846..11328)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R6A1_CLOSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL05311.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L2_039_000M1_scaffold_396_13
unknown

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11507..12223
DNA (717bp) protein (239aa)

This feature has no annotations

L2_039_000M1_scaffold_396_14
[Eubacterium] infirmum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12238..12789
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Eubacterium infirmum F0142 RepID=H1PMN4_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHO83219.1}; TaxID=883109 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiales Family XIII. Incertae Sedis.;" source="Eubacterium infirmum F0142.;"
hypothetical protein
L2_039_000M1_scaffold_396_15
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

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13017..13532
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Syntrophothermus lipocalidus (strain DSM 12680 / TGB-C1) RepID=D7CN29_SYNLT
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR01290.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
hypothetical protein
L2_039_000M1_scaffold_396_16
Clostridium sp. CAG:138, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13520..15166
DNA (1647bp) protein (549aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:138 RepID=R6AWV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA51066.1}; TaxID=1262775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:138.;"
hypothetical protein
L2_039_000M1_scaffold_396_17
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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15191..15925
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4U0_9FIRM
CRISPR-associated endoribonuclease {ECO:0000256|PIRNR:PIRNR005054}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated protein Cas6
L2_039_000M1_scaffold_396_18
Streptococcus sp. oral taxon 058, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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15929..17302
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Streptococcus sp. oral taxon 058 str. F0407 RepID=G6CA37_9STRE
Uncharacterized protein {ECO:0000313|EMBL:EHI76525.1}; TaxID=861455 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. oral taxon 058 str. F0407.;"
hypothetical protein
L2_039_000M1_scaffold_396_19
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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17304..18824
DNA (1521bp) protein (507aa)
CRISPR-associated protein, Cmr2 family n=1 Tax=Streptococcus mitis bv. 2 str. SK95 RepID=F9LXT4_STRMT
CRISPR-associated protein, Cmr2 family {ECO:0000313|EMBL:EGU65414.1}; TaxID=1000588 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis bv. 2 str. SK95.;"
hypothetical protein
L2_039_000M1_scaffold_396_20
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18821..19900
DNA (1080bp) protein (360aa)
CRISPR-associated protein, Cmr3 family n=2 Tax=Clostridium botulinum A RepID=A5I3U5_CLOBH
Putative CRISPR-associated protein {ECO:0000313|EMBL:BAQ13949.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
cmr3; CRISPR-associated Cmr3 family protein
L2_039_000M1_scaffold_396_21
Streptococcus sp. oral taxon 058, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

19902..20612
DNA (711bp) protein (237aa)
CRISPR-associated RAMP protein, Cmr4 family n=1 Tax=Streptococcus sp. oral taxon 058 str. F0407 RepID=G6CA40_9STRE
CRISPR-associated RAMP protein, Cmr4 family {ECO:0000313|EMBL:EHI76528.1}; TaxID=861455 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sp. oral taxon 058 str. F0407.;"
Cmr4 family CRISPR-associated RAMP protein
L2_039_000M1_scaffold_396_22
unknown

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20625..21023
DNA (399bp) protein (133aa)

This feature has no annotations

L2_039_000M1_scaffold_396_23
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21027..21863
DNA (837bp) protein (279aa)
CRISPR-associated RAMP protein, Cmr6 family n=1 Tax=Streptococcus mitis bv. 2 str. SK95 RepID=F9LXT8_STRMT
CRISPR-associated RAMP protein, Cmr6 family {ECO:0000313|EMBL:EGU65456.1}; TaxID=1000588 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis bv. 2 str. SK95.;"
CRISPR-associated RAMP Cmr6 family protein
L2_039_000M1_scaffold_396_24
Streptococcus mitis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

21872..24028
DNA (2157bp) protein (719aa)
Putative uncharacterized protein n=1 Tax=Streptococcus mitis bv. 2 str. SK95 RepID=F9LXT9_STRMT
Putative uncharacterized protein {ECO:0000313|EMBL:EGU65403.1}; TaxID=1000588 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus mitis bv. 2 str. SK95.;"
hypothetical protein
L2_039_000M1_scaffold_396_25
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

24116..24490
DNA (375bp) protein (125aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6VM12_9FIRM
CRISPR-associated protein Cas1
L2_039_000M1_scaffold_396_26
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25833..27053
DNA (1221bp) protein (407aa)
Predicted ATPase (AAA+ superfamily) n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PGQ2_9FIRM
Predicted ATPase (AAA+ superfamily) {ECO:0000313|EMBL:CDC17631.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted ATPase (AAA+ superfamily)
L2_039_000M1_scaffold_396_27
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27142..27534
DNA (393bp) protein (131aa)
ArsC family transcriptional regulator n=1 Tax=Bacillus coagulans RepID=UPI000367E130
protein tyrosine phosphatase
Protein tyrosine phosphatase {ECO:0000313|EMBL:CDZ24616.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L2_039_000M1_scaffold_396_28
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27555..28457
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W8H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07393.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L2_039_000M1_scaffold_396_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28476..28679
DNA (204bp) protein (68aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJQ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23861.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
membrane protein
Displaying 29 items

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