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L2_039_000M1_scaffold_438

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_438_1
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(1..93)
DNA (93bp) protein (31aa)
Transposase IS3/IS911 family protein n=1 Tax=Pelosinus fermentans JBW45 RepID=I9NT57_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJQ26174.1}; TaxID=1192197 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans JBW45.;"
L2_039_000M1_scaffold_438_2
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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267..749
DNA (483bp) protein (161aa)
Sigma-70 region 2 n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGZ3_CLOSV
Sigma-70 region 2 {ECO:0000313|EMBL:EDS06177.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
hypothetical protein
L2_039_000M1_scaffold_438_3
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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746..1495
DNA (750bp) protein (250aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NGZ4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN33006.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L2_039_000M1_scaffold_438_4
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1486..2184
DNA (699bp) protein (233aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGZ5_CLOSV
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDS06179.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
L2_039_000M1_scaffold_438_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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2186..3334
DNA (1149bp) protein (383aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KWD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33004.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L2_039_000M1_scaffold_438_6
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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3442..4149
DNA (708bp) protein (236aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NFX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78902.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
L2_039_000M1_scaffold_438_7
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4152..5678
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NFL1_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN32590.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
CARDB.
L2_039_000M1_scaffold_438_8
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5644..7071
DNA (1428bp) protein (476aa)
Efflux ABC transporter, permease protein n=2 Tax=Clostridiales RepID=B0NFL0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN32589.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ABC-type antimicrobial peptide transport system, permease component
L2_039_000M1_scaffold_438_9
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7091..7354)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BIM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62367.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
hypothetical protein
L2_039_000M1_scaffold_438_10
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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7530..8054
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D2X7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73144.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
ATP:corrinoid adenosyltransferase BtuR/CobO/CobP
L2_039_000M1_scaffold_438_11
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8198..8881
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5CZ07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX73145.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
hypothetical protein
L2_039_000M1_scaffold_438_12
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8982..9641
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MIB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70745.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Predicted metal-dependent phosphoesterases (PHP family)
L2_039_000M1_scaffold_438_13
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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9743..10348
DNA (606bp) protein (202aa)
Selenium metabolism protein YedF n=1 Tax=Dorea sp. 5-2 RepID=R9N748_9FIRM
Selenium metabolism protein YedF {ECO:0000313|EMBL:EOS78893.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
selenium metabolism protein YedF
L2_039_000M1_scaffold_438_14
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10579..11502
DNA (924bp) protein (308aa)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
selenium donor protein (EC:2.7.9.3)
Selenide, water dikinase n=1 Tax=Dorea sp. CAG:105 RepID=R5D4Z2_9FIRM
L2_039_000M1_scaffold_438_15
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11536..12963
DNA (1428bp) protein (476aa)
L-seryl-tRNA(Sec) selenium transferase {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029253}; EC=2.9.1.1 {ECO:0000256|HAMAP-Rule:MF_00423, ECO:0000256|SAAS:SAAS00029254};; Selenocysteine synthase {ECO:0000256|HAMAP-Rule:MF_00423}; Selenocysteinyl-tRNA(Sec) synthase {ECO:0000256|HAMAP-Rule:MF_00423}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
selA; selenocysteine synthase SelA (EC:2.9.1.1)
L-seryl-tRNA(Sec) selenium transferase n=1 Tax=Dorea sp. CAG:317 RepID=R6XNT5_9FIRM
L2_039_000M1_scaffold_438_16
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12978..14894
DNA (1917bp) protein (639aa)
Selenocysteine-specific translation elongation factor n=2 Tax=Clostridiales RepID=B0NFK0_CLOSV
Selenocysteine-specific translation elongation factor {ECO:0000313|EMBL:EGN32579.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
selB; selenocysteine-specific elongation factor SelB
L2_039_000M1_scaffold_438_17
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14891..15832
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N6H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78889.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
transcriptional regulator, LysR family
L2_039_000M1_scaffold_438_18
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15955..17121
DNA (1167bp) protein (389aa)
Cysteine desulfurase n=1 Tax=Dorea sp. CAG:105 RepID=R5D8U3_9FIRM
Cysteine desulfurase {ECO:0000313|EMBL:CCX75249.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
cysteine desulfurase family protein
L2_039_000M1_scaffold_438_19
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17140..18237
DNA (1098bp) protein (366aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NFJ7_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EDS06627.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
YeeE/YedE family (DUF395).
L2_039_000M1_scaffold_438_20
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18295..18498
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N7E8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78886.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Predicted redox protein, regulator of disulfide bond formation
L2_039_000M1_scaffold_438_21
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18501..18737
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WV83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07946.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Protein of unknown function (DUF3343).
L2_039_000M1_scaffold_438_22
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18831..19418)
DNA (588bp) protein (196aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridiales RepID=B0NFJ4_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN32573.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
TetR family transcriptional regulator
L2_039_000M1_scaffold_438_23
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19555..20589)
DNA (1035bp) protein (345aa)
Proline racemase (EC:5.1.1.4)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WLZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07944.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
L2_039_000M1_scaffold_438_24
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21145..22545
DNA (1401bp) protein (467aa)
Respiratory-chain NADH dehydrogenase 51 Kd subunit n=1 Tax=Dorea sp. CAG:317 RepID=R6WA49_9FIRM
Respiratory-chain NADH dehydrogenase 51 Kd subunit {ECO:0000313|EMBL:CDD07943.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
prdC; electron transfer protein
L2_039_000M1_scaffold_438_25
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22705..24567
DNA (1863bp) protein (621aa)
prdA; D-proline reductase proprotein prdA [Contains: D-proline reductase subunit beta (D-proline reductase 45 kDa subunit); D-proline reductase subunit alpha (D-proline reductase 23 kDa subunit)] (EC:1.21.4.1)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MI38_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS70734.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
L2_039_000M1_scaffold_438_26
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24585..24884
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WV78_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07941.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L2_039_000M1_scaffold_438_27
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24887..25339
DNA (453bp) protein (151aa)
D-proline reductase, PrdB subunit n=2 Tax=Clostridiales RepID=B0NFI9_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN32568.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
D-proline reductase (dithiol)
L2_039_000M1_scaffold_438_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25760..26527
DNA (768bp) protein (256aa)
D-proline reductase (EC:1.21.4.1)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BIP3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE20123.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
L2_039_000M1_scaffold_438_29
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26540..27022
DNA (483bp) protein (161aa)
Uncharacterized protein n=2 Tax=Dorea RepID=A6BIP4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM62390.1}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
D-proline reductase (dithiol)
Displaying 29 items

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