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L2_039_000M1_scaffold_1098

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_1098_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(334..558)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2U4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD37919.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
membrane protein
L2_039_000M1_scaffold_1098_2
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(555..1025)
DNA (471bp) protein (157aa)
Sortase n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V6X3_CLOSS
sortase
Sortase {ECO:0000313|EMBL:BAK45995.1}; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
L2_039_000M1_scaffold_1098_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1022..1279)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:197 RepID=R5YWT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA25991.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
transcriptional regulator
L2_039_000M1_scaffold_1098_4
unknown

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comp(1358..1531)
DNA (174bp) protein (58aa)

This feature has no annotations

L2_039_000M1_scaffold_1098_5
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1515..2951)
DNA (1437bp) protein (479aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W902_9FIRM
integral membrane sensor signal transduction histidine kinase
L2_039_000M1_scaffold_1098_6
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2936..3616)
DNA (681bp) protein (227aa)
Response regulator receiver domain protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XMJ9_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD07517.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
two component transcriptional regulator
L2_039_000M1_scaffold_1098_7
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3632..4378)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WU56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07516.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
putative bacteriocin ABC transporter, permease protein subunit
L2_039_000M1_scaffold_1098_8
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4375..4560)
DNA (186bp) protein (62aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WDS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07515.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
lantibiotic permease protein SpaE/mutE
L2_039_000M1_scaffold_1098_9
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4638..5144)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WDS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07515.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
transporter protein
L2_039_000M1_scaffold_1098_10
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5147..5881)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WKV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07514.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
ABC transporter
L2_039_000M1_scaffold_1098_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6595..7596
DNA (1002bp) protein (334aa)
CAAX amino terminal protease family protein n=3 Tax=Clostridiales RepID=A7B5N4_RUMGN
CAAX amino terminal protease family protein {ECO:0000313|EMBL:CCZ68720.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
CAAX amino terminal protease family protein
L2_039_000M1_scaffold_1098_12
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7890..8810)
DNA (921bp) protein (307aa)
Elongation factor Ts n=1 Tax=Dorea sp. CAG:317 RepID=R6W8Z7_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
translation elongation factor Ts (EF-Ts)
L2_039_000M1_scaffold_1098_13
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8851..9600)
DNA (750bp) protein (250aa)
30S ribosomal protein S2 n=2 Tax=Clostridiales RepID=B0NHL1_CLOSV
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
SSU ribosomal protein S2P
L2_039_000M1_scaffold_1098_14
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9828..10874)
DNA (1047bp) protein (349aa)
NlpC/P60 family protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7G4J1_9FIRM
NlpC/P60 family protein {ECO:0000313|EMBL:CDE20932.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
Spr; cell wall-associated hydrolase
L2_039_000M1_scaffold_1098_15
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11036..11965)
DNA (930bp) protein (310aa)
Uncharacterized protein n=2 Tax=Dorea sp. 5-2 RepID=R9NQ10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS82127.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
Predicted metal-dependent membrane protease
L2_039_000M1_scaffold_1098_16
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12122..12613)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NGQ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS82126.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
YbaK/prolyl-tRNA synthetase associated region
L2_039_000M1_scaffold_1098_17
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12717..13643)
DNA (927bp) protein (309aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
tRNA-dihydrouridine synthase n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KVL0_9FIRM
dihydrouridine synthase family protein
Displaying 17 items

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