ggKbase home page

L2_039_000M1_scaffold_1119_2

Organism: dasL2_039_000M1_metabat_metabat_20_fa_fa

near complete RP 46 / 55 MC: 4 BSCG 46 / 51 MC: 5 ASCG 13 / 38
Location: comp(1224..4565)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 1113.0
  • Bit_score: 1885
  • Evalue 0.0
transcription-repair coupling factor (EC:3.6.1.-) similarity KEGG
DB: KEGG
  • Identity: 69.3
  • Coverage: 1114.0
  • Bit_score: 1549
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Dorea sp. 5-2 RepID=R9NAQ2_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 83.9
  • Coverage: 1113.0
  • Bit_score: 1885
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Dorea sp. 5-2 → Dorea → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 3342
ATGCAGGCTTTGATTGCGCCGCTTAAGGAACTGGCAGAATACGAAGAATTATATAGAGAACGAAAGAAGGAACCGGGGATGCTTCGGGTAACGGGGTGTGTGAATTCTCAGAAAACCCACATGATGTATGCCCTGAGCGAGAATATCCGTTATAAAGTCGTGGTTTGTGCCGGTGAGTCGAAGGCAAAACAGGTCTATGAAGAATATCGTTTTTTGGATCCGCAGACTTATTTTTATCCGGCGAAGGATCTTCTTTTTTATCAGGCTGATTTAAGAAGTAAAGAACTGGTTCGCGAGCGGATGGAAGTGCTGCAGTCGGTGGTGGCAGGAGAAAGTCTGACGGTGGTGACAAGTTTTGATGCATTTATGGATGCATTGCTTCCAAGAGATGTCATTGCAGGACGGATGATTCGAATCAAACAGGACGATACGCTGGATTTAGATGCGCTTGCAAGAAAACTTGCAGATCTGGGGTATGACCGGGAGGTACAGATTGAAGGACCGGGACAGTTTGCGGTCAGAGGCGGAATTCTGGACGTCTATCCGCTGACAGAAGAGCAGCCGGTGAGAATCGAACTGTGGGGGGAAGAGATTGATTCCATTCGTACGTTTGATCCAGAGACCCAAAGATCGATAGAAAATTTAGAAGAGGTGTGTATCTGTCCGGCAGAGGAATTTCCGAGGGAAGAGGAATCGGCGGTTTCGTTTCTGGATTATTTCCCGAAAGAGGAGACGATTCTCTTTTTAAATGAGCCGGTTCGCCTGGTGGAAAAAGGCCGCGGCGTAGAAGAAGAGTTTATGGAAGCTCAGAAGAAACGGGTGGAAGCCGGGTATGAGATGAAAGAAGGAGAAGTTCGTCTCTACCAGGCGGCAGAGATTTTGAAAAAAATAAATACCTACAGCAGTATCGGCTTTTTTGCGCTGGATATTCGATGCAAAGAATTGGTGATGCGCGGTACTTATGGGCTCCAGGCAAGAAGTGTCAATCCGTATAACAGTAGTTTTGAGATGTTGACACAGGATTTGAAGCGCTATAAGAGAGAAGGATACCGGGTGGTGCTCTTATCCGGTTCAAGGACGCGTGCCAAACGTCTGGCGGAAGATCTAAGGGATTATAACCTGAGCAGTTTTTATAGCGAAGATATGGATCGTGAAGTGAAGCCGCAGGAAATTATGACGGCGTATGGGCATGTGGCAGAAGGGTATGAGTACCCAATGCTGAAGTTTACCGTAATCTCGGAGACGGATATCTTTGGAAAGATTAGGAAAAAGAAGAAGAGAAAAAAGTACGAAGGACAGAAGATTGCAAGTTTTGCAGAGTTAAAGCCGGGGGACTATGTGGTTCATGAGAACCACGGCCTGGGGATTTATCAAGGGATTGAGAAGATTGAAGTGGATAAGATCTCCAAGGATTACATGAAGATCTCCTATGCACAGGGCGGGAATCTTTACATCCCGGCAACTCAGCTTGACTTGATTCAGAAGTATGCCAGCGCCGATGCGAAGAAACCGAAGTTAAATAAGTTGGGAACCCAGGAATGGAATAAGACCAAGAGCCGTGTGCGTGGAGCGGTAAGGGAGATTGCCAAAGATCTGGTAAAACTTTATGCCGCAAGGCAGGAGCAGGAAGGATTTGTCTACGGGGAAGATACCGTCTGGCAGCGGGAGTTTGAAGAGATGTTCCCGTTCGAGGAGACGGAGGATCAGATGATGGCGATCGAAGCGGTGAAGCAGGATATGCAGAGCAGCAAGATTATGGACCGTCTGATTTGCGGAGATGTCGGATATGGGAAGACAGAGATTGCCATTCGGGCAGCATTTAAGGCGGTGCAAGAGGATAAACAGGTCGTTTATCTGGTACCGACAACGATTCTGGCTCAGCAGCATTATAATACCTTTGTTCAGAGAATGAAGGATTTCCCGGTGCGGATTGATCTGATGTGCCGGTTTCGGACACCTGCTCAGCAGAAAAAGACGGTAGAAGACCTGAAACGTGGTCTGGTGGATATTGTGATTGGAACTCATCGGGTATTGGGATCCGATATCAAATTTAAAGATCTGGGACTTTTGATTATTGACGAAGAGCAGCGATTTGGCGTGCAGCATAAAGAGAAGATCAAAAAGTTAAAGGAAAATGTTGATGTGCTGACGTTGACGGCGACGCCGATTCCGAGAACACTTCACATGAGCTTGATTGGCATCCGGGACATGAGTGTGCTGGAGGAGGCGCCGAATGACCGGCTGCCGATTCAGACCTACATTATGGAATATAATGACGAGATGGTACGAGAAGCAATCGAACGAGAGTGTGCAAGGCAGGGTCAGGTGTATTATGTCTATAATCGAGTGGAAGATATTGAGGAGATTACTGCACATATCAAGAAGCTGGTTCCTGAGCTGACCGTAGAATTCGCGCATGGACAGATGAAGGAACATCAGCTGGAACGGATTATGTATGACTTTATGAACGGCGAGATCGATGTTCTGGTTTCTACGACCATTATTGAGACGGGACTTGATATTTCCAATGCAAATACGATGATTATCCATGATGCAGACAGGCTGGGATTGTCGCAGCTTTATCAATTAAGAGGCCGGGTTGGAAGATCGAATCGGATGGCGTATGCGTTCTTGTTATACCGACGAGATAAAATGTTAAAAGAAGTGGCAGAAAAGCGCCTGGCGGCAATTCGGGAATTTACCGATTTGGGATCTGGTTTTAAGATTGCCATGCGAGATCTTGAAATTCGCGGCGCCGGAAATCTTCTGGGGGCAGAGCAGCATGGGCATATGGAAGCAGTTGGATATGATATGTATTGTAAGATGCTCAATGAGGCGGTAAAGCTTTTGAAAGGAGAAATAGAAGAAGAGACTTTTGCTACAACGATGGATTTGAATGTGGATGCGTATATTCCGGATTCTTATATTGCCAATGAGTATCAGAAGCTGGATATTTATAAGAGGATTGCGGCCATCGAGAATGAGGAAGAGAAAGAAGGTATGATCGAAGAGCTGATTGATCGGTTTGGAGATATTCCGAAAAAGGTGGAGAAGCTTTTGACAGTGGCAAGCTTAAAAGCGCAGGCGCACAGGCTTTATGTAACGTCTGTAGAACAGAAAGGACAGATCTATACCTTCACTATGTATGAGAAGGCAAAAGTGCAGCCGCAGAAGATTCCGGAGCTGATCGCGAACTTTAAGGGAACGCTGGCTTTTCGAGCTGATGCGGAAAATCCAAGTTTCATCTATGAGAAGAAGATCCGAAATCGAAAAGAAAAGCCGGAAGACAGTCTGGAAGTCGTGAAAAAAGTGTTAAATGGTCTGAAAGCATTGATTGAATAG
PROTEIN sequence
Length: 1114
MQALIAPLKELAEYEELYRERKKEPGMLRVTGCVNSQKTHMMYALSENIRYKVVVCAGESKAKQVYEEYRFLDPQTYFYPAKDLLFYQADLRSKELVRERMEVLQSVVAGESLTVVTSFDAFMDALLPRDVIAGRMIRIKQDDTLDLDALARKLADLGYDREVQIEGPGQFAVRGGILDVYPLTEEQPVRIELWGEEIDSIRTFDPETQRSIENLEEVCICPAEEFPREEESAVSFLDYFPKEETILFLNEPVRLVEKGRGVEEEFMEAQKKRVEAGYEMKEGEVRLYQAAEILKKINTYSSIGFFALDIRCKELVMRGTYGLQARSVNPYNSSFEMLTQDLKRYKREGYRVVLLSGSRTRAKRLAEDLRDYNLSSFYSEDMDREVKPQEIMTAYGHVAEGYEYPMLKFTVISETDIFGKIRKKKKRKKYEGQKIASFAELKPGDYVVHENHGLGIYQGIEKIEVDKISKDYMKISYAQGGNLYIPATQLDLIQKYASADAKKPKLNKLGTQEWNKTKSRVRGAVREIAKDLVKLYAARQEQEGFVYGEDTVWQREFEEMFPFEETEDQMMAIEAVKQDMQSSKIMDRLICGDVGYGKTEIAIRAAFKAVQEDKQVVYLVPTTILAQQHYNTFVQRMKDFPVRIDLMCRFRTPAQQKKTVEDLKRGLVDIVIGTHRVLGSDIKFKDLGLLIIDEEQRFGVQHKEKIKKLKENVDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNDRLPIQTYIMEYNDEMVREAIERECARQGQVYYVYNRVEDIEEITAHIKKLVPELTVEFAHGQMKEHQLERIMYDFMNGEIDVLVSTTIIETGLDISNANTMIIHDADRLGLSQLYQLRGRVGRSNRMAYAFLLYRRDKMLKEVAEKRLAAIREFTDLGSGFKIAMRDLEIRGAGNLLGAEQHGHMEAVGYDMYCKMLNEAVKLLKGEIEEETFATTMDLNVDAYIPDSYIANEYQKLDIYKRIAAIENEEEKEGMIEELIDRFGDIPKKVEKLLTVASLKAQAHRLYVTSVEQKGQIYTFTMYEKAKVQPQKIPELIANFKGTLAFRADAENPSFIYEKKIRNRKEKPEDSLEVVKKVLNGLKALIE*