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L2_039_000M1_scaffold_1119

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_000M1_scaffold_1119_1
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(107..1168)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9NBM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS80346.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
PPIC-type PPIASE domain.
L2_039_000M1_scaffold_1119_2
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1224..4565)
DNA (3342bp) protein (1114aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Dorea sp. 5-2 RepID=R9NAQ2_9FIRM
L2_039_000M1_scaffold_1119_3
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4568..5152)
DNA (585bp) protein (195aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Dorea sp. 5-2 RepID=R9NAL9_9FIRM
L2_039_000M1_scaffold_1119_4
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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5296..5730
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6XME0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD07482.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L2_039_000M1_scaffold_1119_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5745..6008)
DNA (264bp) protein (88aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=B0NCF0_CLOSV
Uncharacterized protein {ECO:0000313|EMBL:EGN39699.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
hypothetical protein
L2_039_000M1_scaffold_1119_6
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6044..6694)
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD hydrolase family IA variant 1 n=1 Tax=Dorea sp. CAG:105 RepID=R5DCV2_9FIRM
HAD hydrolase family IA variant 1 {ECO:0000313|EMBL:CCX74692.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L2_039_000M1_scaffold_1119_7
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6791..7570)
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BY43_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
RNA polymerase, sigma subunit, RpsG/SigG
L2_039_000M1_scaffold_1119_8
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7669..9414)
DNA (1746bp) protein (582aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IYT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41901.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC transporter ATP-binding protein/permease
L2_039_000M1_scaffold_1119_9
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9404..11179)
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IIA2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41903.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC-type multidrug transport system, ATPase and permease components
L2_039_000M1_scaffold_1119_10
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11186..12796)
DNA (1611bp) protein (537aa)
Metallo-beta-lactamase domain protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NCE5_CLOSV
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EDS07646.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L2_039_000M1_scaffold_1119_11
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12846..13547)
DNA (702bp) protein (234aa)
RNA polymerase sigma factor n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BY45_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
RNA polymerase, sigma 29 subunit, SigE
Displaying 11 items

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