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L2_039_121G1_scaffold_1013

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_1013_1
Lactobacillus kisonensis, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(755..1201)
DNA (447bp) protein (149aa)
DNA-binding helix-turn-helix protein n=1 Tax=Lactobacillus kisonensis F0435 RepID=H1LFJ4_9LACO
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EHO51709.1}; TaxID=797516 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus kisonensis F0435.;"
hypothetical protein
L2_039_121G1_scaffold_1013_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1330..2361)
DNA (1032bp) protein (344aa)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=2 Tax=Clostridium RepID=R6PFZ3_9CLOT
L2_039_121G1_scaffold_1013_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2366..3856)
DNA (1491bp) protein (497aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FTS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80531.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_039_121G1_scaffold_1013_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3859..4773)
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXR6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23266.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA repair exonuclease
L2_039_121G1_scaffold_1013_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4847..6034)
DNA (1188bp) protein (396aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=B6FTT0_9CLOT
histidine kinase
L2_039_121G1_scaffold_1013_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6024..6713)
DNA (690bp) protein (230aa)
Response regulator receiver domain protein n=2 Tax=Clostridium RepID=B6FTT1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23264.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L2_039_121G1_scaffold_1013_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6784..8175)
DNA (1392bp) protein (464aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=2 Tax=Clostridium RepID=B6FTT2_9CLOT
L2_039_121G1_scaffold_1013_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8235..8861)
DNA (627bp) protein (209aa)
HAD hydrolase, family IA, variant 1 n=2 Tax=Clostridium RepID=B6FTT3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23262.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD-superfamily hydrolase
L2_039_121G1_scaffold_1013_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8858..9475)
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PXR2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23261.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_121G1_scaffold_1013_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9490..10608)
DNA (1119bp) protein (373aa)
Monogalactosyldiacylglycerol synthase, C-terminal domain protein n=2 Tax=Clostridium RepID=B6FTT5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23260.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Glycosyltransferase Family 28-like b-glycosyltransferase
L2_039_121G1_scaffold_1013_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11062..11265)
DNA (204bp) protein (68aa)
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39 n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFY5_9CLOT
Bacteriocin-processing peptidase. Cysteine peptidase. MEROPS family C39 {ECO:0000313|EMBL:CDC23258.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP-binding cassette subfamily B protein
L2_039_121G1_scaffold_1013_12
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11309..11887)
DNA (579bp) protein (193aa)
CAAX amino terminal protease family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTT8_9CLOT
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EEA80541.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
metal-dependent membrane protease
L2_039_121G1_scaffold_1013_13
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12217..12399)
DNA (183bp) protein (61aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LSY5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJJ70411.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
hypothetical protein
L2_039_121G1_scaffold_1013_14
unknown

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comp(12396..12596)
DNA (201bp) protein (67aa)

This feature has no annotations

L2_039_121G1_scaffold_1013_15
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12995..13468)
DNA (474bp) protein (158aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YQH3_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EPD64380.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
RNA polymerase sigma factor, sigma-70 family
L2_039_121G1_scaffold_1013_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13705..14199
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTU7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA80550.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted membrane protein
Displaying 16 items

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