ggKbase home page

L2_039_121G1_scaffold_24

Search features with annotation key words

Displaying items 1-30 of 158 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_24_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..1315
DNA (1314bp) protein (438aa)
ilvD; dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Dihydroxy-acid dehydratase n=3 Tax=Bifidobacterium RepID=E4P0V1_BIFBP
L2_039_121G1_scaffold_24_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1679..2575)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GM49_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42691.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_039_121G1_scaffold_24_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2869..5574)
DNA (2706bp) protein (902aa)
acn; aconitate hydratase (EC:4.2.1.3)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Aconitate hydratase n=3 Tax=Bifidobacterium bifidum RepID=E3ENX4_BIFBS
L2_039_121G1_scaffold_24_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5647..8187)
DNA (2541bp) protein (847aa)
ctpE; cation-transporting ATPase CtpE (EC:3.6.3.6)
CtpE Cation-transporting ATPase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0U8_BIFBP
Putative cation-transporting ATPase E {ECO:0000313|EMBL:AFL04197.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_039_121G1_scaffold_24_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8484..9098)
DNA (615bp) protein (205aa)
Conserved hypothetical secreted protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENX2_BIFBS
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:ADO52847.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_24_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9103..10365)
DNA (1263bp) protein (421aa)
tRNA (Uracil-5-) -methyltransferase (EC:2.1.1.35)
TRAM domain protein n=3 Tax=Bifidobacterium RepID=E4V8P6_BIFBI
TRAM domain protein {ECO:0000313|EMBL:ERI83086.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97816.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_24_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10391..11164)
DNA (774bp) protein (258aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENX0_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52845.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_24_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11204..12025)
DNA (822bp) protein (274aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WH30_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52844.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_24_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12165..13022)
DNA (858bp) protein (286aa)
Exodeoxyribonuclease III n=2 Tax=Bifidobacterium bifidum RepID=E3ENW8_BIFBS
xth; Exodeoxyribonuclease III
Exodeoxyribonuclease {ECO:0000313|EMBL:EKE51261.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_121G1_scaffold_24_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13163..14581
DNA (1419bp) protein (473aa)
Bleomycin hydrolase C n=2 Tax=Bifidobacterium bifidum RepID=E3ENW7_BIFBS
pepC1; bleomycin hydrolase C
Aminopeptidase C domain protein {ECO:0000313|EMBL:ERI83082.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_24_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14777..16567)
DNA (1791bp) protein (597aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTI7_BIFBI
OppA Oligopeptide-binding protein {ECO:0000313|EMBL:KFI42683.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
oppA; oligopeptide-binding protein OppA
L2_039_121G1_scaffold_24_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16731..18947)
DNA (2217bp) protein (739aa)
oppD; oligopeptide transport ATP-binding protein OppD (EC:3.6.3.24)
Oligopeptide transport ATP-binding protein OppD n=2 Tax=Bifidobacterium bifidum RepID=K2MUX8_BIFBI
OppD Oligopeptide transport ATP-binding protein {ECO:0000313|EMBL:CDB22728.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_24_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18947..19891)
DNA (945bp) protein (315aa)
Peptide/nickel transport system, permease protein n=6 Tax=Bifidobacterium bifidum RepID=E3ENW4_BIFBS
oppC; oligopeptide transport system permease protein oppC
Putative oligopeptide ABC transporter, permease protein OppC {ECO:0000313|EMBL:EFR49981.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_039_121G1_scaffold_24_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19913..20896)
DNA (984bp) protein (328aa)
Peptide/nickel transport system, permease protein n=7 Tax=Bifidobacterium RepID=E3ENW3_BIFBS
oppB; oligopeptide transport system permease protein OppB
Putative peptide transport permease protein {ECO:0000313|EMBL:EKF15846.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_039_121G1_scaffold_24_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21293..22297)
DNA (1005bp) protein (335aa)
Tyrosine recombinase XerC n=4 Tax=Bifidobacterium RepID=E4V8N7_BIFBI
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
xerC; tyrosine recombinase
L2_039_121G1_scaffold_24_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22383..22634
DNA (252bp) protein (84aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WH22_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52836.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_24_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22708..23571)
DNA (864bp) protein (288aa)
TyrA Prephenate dehydrogenase {ECO:0000313|EMBL:KFI42677.1}; EC=1.3.1.12 {ECO:0000313|EMBL:KFI42677.1};; EC=1.3.1.43 {ECO:0000313|EMBL:KFI42677.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
tyrA; prephenate dehydrogenase (EC:1.3.1.12)
Prephenate dehydrogenase (Fragment) n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MUX1_BIFBI
L2_039_121G1_scaffold_24_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23739..24770)
DNA (1032bp) protein (344aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6H907_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22722.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
chorismate mutase
L2_039_121G1_scaffold_24_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24767..25288)
DNA (522bp) protein (174aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S8_BIFBP
hypothetical protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42675.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_039_121G1_scaffold_24_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25930..27852)
DNA (1923bp) protein (641aa)
typA; GTP-binding protein TypA (EC:2.7.7.4)
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KFI42674.1}; EC=3.6.5.- {ECO:0000313|EMBL:KFI42674.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
GTP-binding protein TypA/BipA n=7 Tax=Bifidobacterium RepID=E4P0S7_BIFBP
L2_039_121G1_scaffold_24_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28033..29310)
DNA (1278bp) protein (426aa)
iscS; putative cysteine desulfurase (EC:2.8.1.7)
Putative cysteine desulfurase {ECO:0000313|EMBL:AFL04180.1}; EC=2.8.1.7 {ECO:0000313|EMBL:AFL04180.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative cysteine desulfurase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WH17_BIFBI
L2_039_121G1_scaffold_24_22
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29313..30206)
DNA (894bp) protein (298aa)
nadC; nicotinate-nucleotide pyrophosphorylase NadC (EC:2.4.2.19)
NadC Nicotinate-nucleotide pyrophosphorylase n=5 Tax=Bifidobacterium RepID=E4P0S5_BIFBP
NadC Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:CDB22717.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_24_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30340..31992)
DNA (1653bp) protein (551aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L-aspartate oxidase n=4 Tax=Bifidobacterium bifidum RepID=E3ENV4_BIFBS
nadB; L-aspartate oxidase
L2_039_121G1_scaffold_24_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32045..33325)
DNA (1281bp) protein (427aa)
nadA; quinolinate synthetase A NadA (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S3_BIFBP
L2_039_121G1_scaffold_24_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33443..34225)
DNA (783bp) protein (261aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S2_BIFBP
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:CDB22714.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_24_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34429..35001)
DNA (573bp) protein (191aa)
Segregation and condensation protein B n=3 Tax=Bifidobacterium bifidum RepID=E3ENV1_BIFBS
scpB; segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_24_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35098..35952)
DNA (855bp) protein (285aa)
ScpA Segregation and condensation protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S0_BIFBP
scpA; segregation and condensation protein ScpA
Segregation and condensation protein A {ECO:0000313|EMBL:CDB22712.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_24_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35989..37008)
DNA (1020bp) protein (340aa)
Chromosome partitioning protein n=5 Tax=Bifidobacterium bifidum RepID=E3ENU9_BIFBS
chromosome partitioning protein
Chromosome partitioning protein {ECO:0000313|EMBL:ADO52824.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_24_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(37070..38038)
DNA (969bp) protein (323aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0R8_BIFBP
integrase/recombinase
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_24_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(38187..38570)
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=8 Tax=Bifidobacterium RepID=E3ENU7_BIFBS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 158 in total

View Taxonomy