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L2_039_121G1_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 127 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_32_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1035)
DNA (1035bp) protein (345aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
gatA; aspartyl/glutamyl-tRNA amidotransferase subunit A (EC:3.5.1.4)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=3 Tax=Bifidobacterium bifidum RepID=E4VBB5_BIFBI
L2_039_121G1_scaffold_32_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1038..1337)
DNA (300bp) protein (100aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C {ECO:0000256|HAMAP-Rule:MF_00122}; Short=Asp/Glu-ADT subunit C {ECO:0000256|HAMAP-Rule:MF_00122};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00122};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=8 Tax=Bifidobacterium RepID=I3WK51_BIFBI
gatC2; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
L2_039_121G1_scaffold_32_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1510..2001)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMR6_BIFBI
TP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI43986.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
TP-binding protein of ABC transporter system
L2_039_121G1_scaffold_32_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2013..2381)
DNA (369bp) protein (123aa)
TP-binding protein of ABC transporter system (EC:3.6.3.31)
TP-binding protein of ABC transporter system n=3 Tax=Bifidobacterium bifidum RepID=E4NZX7_BIFBP
ABC transporter ATP-binding component {ECO:0000313|EMBL:BAQ98874.1}; Uncharacterized protein {ECO:0000313|EMBL:ERI82848.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_32_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2448..3332)
DNA (885bp) protein (295aa)
SpoU family rRNA methyltransferase n=2 Tax=Bifidobacterium RepID=K2IQV2_BIFBI
SpoU family rRNA methyltransferase {ECO:0000313|EMBL:EKE51165.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
SpoU family rRNA methyltransferase
L2_039_121G1_scaffold_32_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3335..4057)
DNA (723bp) protein (241aa)
pyrE1; orotate phosphoribosyltransferase PyrE (EC:2.4.2.10)
PyrE Orotate phosphoribosyltransferase n=3 Tax=Bifidobacterium bifidum RepID=E4NZX9_BIFBP
Uncharacterized protein {ECO:0000313|EMBL:ERI82850.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_32_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4140..5471)
DNA (1332bp) protein (444aa)
DNA recombination protein rmuC-like protein n=2 Tax=Bifidobacterium bifidum RepID=E4NZY0_BIFBP
DNA recombination protein rmuC-like protein
RmuC domain protein {ECO:0000313|EMBL:ERI82851.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98877.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_32_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5515..5823)
DNA (309bp) protein (103aa)
Putative copper-sensing transcriptional repressor CsoR n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMS1_BIFBI
Putative copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:ERI82852.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_039_121G1_scaffold_32_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5910..8558
DNA (2649bp) protein (883aa)
ABC1 family protein kinase (EC:3.6.3.4)
ABC1 family protein kinase n=3 Tax=Bifidobacterium bifidum RepID=E4NZY2_BIFBP
Copper-exporting ATPase {ECO:0000313|EMBL:ERI82853.1}; Copper-transporting ATPase {ECO:0000313|EMBL:BAQ98879.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_32_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8626..10491)
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WK60_BIFBI
ABC1 family protein kinase {ECO:0000313|EMBL:KFI43993.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_039_121G1_scaffold_32_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10439..10738)
DNA (300bp) protein (100aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WK61_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43994.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_039_121G1_scaffold_32_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10917..11666)
DNA (750bp) protein (250aa)
CobB/CobQ domain protein glutamine amidotransferase n=6 Tax=Bifidobacterium RepID=E3ENA0_BIFBS
CobB/CobQ-like glutamine amidotransferase domain-containing protein
CobB/CobQ domain protein glutamine amidotransferase {ECO:0000313|EMBL:ADO53833.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_32_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11710..13293)
DNA (1584bp) protein (528aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase MurE (EC:6.3.2.9)
MurE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase {ECO:0000313|EMBL:KFI43996.1}; EC=6.3.2.9 {ECO:0000313|EMBL:KFI43996.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
MurE UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZY6_BIFBP
L2_039_121G1_scaffold_32_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13296..14729)
DNA (1434bp) protein (478aa)
Replicative DNA helicase {ECO:0000313|EMBL:EFR50867.1}; EC=3.6.1.- {ECO:0000313|EMBL:EFR50867.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Replicative DNA helicase n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VBA2_BIFBI
dnaB; replicative DNA helicase
L2_039_121G1_scaffold_32_15
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15131..16537
DNA (1407bp) protein (469aa)
GlnD [protein-PII] uridylyltransferase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDH5_9BIFI
GlnD [protein-PII] uridylyltransferase {ECO:0000313|EMBL:CDB22415.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glnD; [protein-PII] uridylyltransferase GlnD
L2_039_121G1_scaffold_32_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16883..18718)
DNA (1836bp) protein (612aa)
glnD; [protein-PII] uridylyltransferase GlnD (EC:2.7.7.59)
Protein-PII uridylyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M2V8_BIFBI
Bifunctional uridylyltransferase/uridylyl-removing enzyme {ECO:0000256|SAAS:SAAS00228994}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_039_121G1_scaffold_32_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19038..19376)
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II n=9 Tax=Bifidobacterium RepID=E3ENA5_BIFBS
glnB; Nitrogen regulatory protein P-II
Nitrogen regulatory protein {ECO:0000313|EMBL:BAQ98887.1}; Nitrogen regulatory protein P-II {ECO:0000313|EMBL:ERI82861.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_121G1_scaffold_32_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19378..20715)
DNA (1338bp) protein (446aa)
Ammonium transporter n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMT2_BIFBI
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
amtP; ammonium transporter
L2_039_121G1_scaffold_32_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20971..22212)
DNA (1242bp) protein (414aa)
Signal recognition particle receptor FtsY n=2 Tax=Bifidobacterium bifidum RepID=U2CFR0_BIFBI
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ftsY; cell division protein FtsY
L2_039_121G1_scaffold_32_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22697..23461
DNA (765bp) protein (255aa)
Transcriptional regulator, TetR family n=5 Tax=Bifidobacterium bifidum RepID=E4NZZ3_BIFBP
tetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EFR50861.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_039_121G1_scaffold_32_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23629..24663
DNA (1035bp) protein (345aa)
Glycosyltransferase {ECO:0000313|EMBL:KFI44005.1}; EC=2.4.1.175 {ECO:0000313|EMBL:KFI44005.1};; EC=2.4.1.226 {ECO:0000313|EMBL:KFI44005.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
glycosyltransferase (EC:2.4.1.226)
Glycosyltransferase, group 2 family protein n=4 Tax=Bifidobacterium bifidum RepID=E4VB95_BIFBI
L2_039_121G1_scaffold_32_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24727..26631
DNA (1905bp) protein (635aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=K2HXP0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16581.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_039_121G1_scaffold_32_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26788..28362)
DNA (1575bp) protein (525aa)
Dipeptidase A domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VB93_BIFBI
Dipeptidase A domain protein {ECO:0000313|EMBL:ERI82676.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
pepDB; dipeptidase A PepDB
L2_039_121G1_scaffold_32_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28488..29021
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DMB5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI44008.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_039_121G1_scaffold_32_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29018..29431
DNA (414bp) protein (138aa)
Htpothetical protein n=4 Tax=Bifidobacterium RepID=E4NZZ7_BIFBP
hypothetical protein
Htpothetical protein {ECO:0000313|EMBL:CDB22427.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_32_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29428..29838
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BWU4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82679.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
cbiQ; cobalt ABC transporter permease
L2_039_121G1_scaffold_32_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29925..30374
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CDS5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ98897.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_039_121G1_scaffold_32_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30417..32285)
DNA (1869bp) protein (623aa)
ATP-binding and permease protein of ABC transporter {ECO:0000313|EMBL:KFI44012.1}; EC=3.6.3.42 {ECO:0000313|EMBL:KFI44012.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ATP-binding cassette, subfamily B n=5 Tax=Bifidobacterium RepID=E3ENB7_BIFBS
ATP-binding cassette, subfamily B
L2_039_121G1_scaffold_32_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32291..34048)
DNA (1758bp) protein (586aa)
ATP-binding and permease protein of ABC transporter n=6 Tax=Bifidobacterium bifidum RepID=E4P001_BIFBP
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI82682.1}; Putative ABC transporter permease and ATP-binding components {ECO:0000313|EMBL:BAQ98899.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
ABC transporter ATP-binding protein
L2_039_121G1_scaffold_32_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34152..34664)
DNA (513bp) protein (171aa)
Putative MarR family transcriptional regulator n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQW5_BIFBI
putative MarR family transcriptional regulator
Putative MarR family transcriptional regulator {ECO:0000313|EMBL:AFL05294.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 127 in total

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