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L2_039_121G1_scaffold_40

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_40_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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277..1014
DNA (738bp) protein (246aa)
Putative FeS assembly ATPase SufC n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWJ8_9CLOT
Putative FeS assembly ATPase SufC {ECO:0000313|EMBL:CDD38300.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L2_039_121G1_scaffold_40_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1014..1931
DNA (918bp) protein (306aa)
ABC-type transport system involved in Fe-S cluster assembly permease component n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZBH4_9CLOT
ABC-type transport system involved in Fe-S cluster assembly permease component {ECO:0000313|EMBL:CDD38281.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L2_039_121G1_scaffold_40_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2006..3316
DNA (1311bp) protein (437aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWI0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38280.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_40_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3391..5100
DNA (1710bp) protein (570aa)
Peptidase S8/S53 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3W4_9CLOT
Peptidase S8/S53 family {ECO:0000313|EMBL:CDD38279.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Subtilisin-like serine proteases
L2_039_121G1_scaffold_40_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5266..6273
DNA (1008bp) protein (336aa)
deoxyguanosinetriphosphate triphosphohydrolase, putative (EC:3.1.5.1)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQL8_9CLOT
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_40_6
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6325..8127
DNA (1803bp) protein (601aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
DNA primase (EC:2.7.7.-)
DNA primase n=1 Tax=Clostridium sp. M62/1 RepID=D4CE96_9CLOT
L2_039_121G1_scaffold_40_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8204..9322
DNA (1119bp) protein (373aa)
RNA polymerase sigma factor SigA n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWG2_9CLOT
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNA polymerase, sigma 70 subunit, RpoD
L2_039_121G1_scaffold_40_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9322..10092
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3U5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38259.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted SAM-dependent methyltransferase
L2_039_121G1_scaffold_40_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10070..10870
DNA (801bp) protein (267aa)
Putative GTP cyclohydrolase 1 type 2 {ECO:0000256|RuleBase:RU004385}; EC=3.5.4.16 {ECO:0000256|RuleBase:RU004385};; GTP cyclohydrolase I {ECO:0000256|RuleBase:RU004385}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Putative GTP cyclohydrolase 1 type 2 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQJ9_9CLOT
conserved hypothetical protein TIGR00486
L2_039_121G1_scaffold_40_10
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10908..12563
DNA (1656bp) protein (552aa)
Uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000313|EMBL:CBK78160.1}; EC=2.7.1.48 {ECO:0000313|EMBL:CBK78160.1};; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Uridine kinase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DKD6_CLOSC
L2_039_121G1_scaffold_40_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13175..13600
DNA (426bp) protein (142aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZBF0_9CLOT
phosphorylase; S-adenosylhomocysteine nucleosidase
L2_039_121G1_scaffold_40_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13782..14210)
DNA (429bp) protein (143aa)
Aspartate carbamoyltransferase regulatory subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWF3_9CLOT
Aspartate carbamoyltransferase regulatory subunit {ECO:0000313|EMBL:CDD38250.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Aspartate carbamoyltransferase, regulatory subunit
L2_039_121G1_scaffold_40_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14204..15127)
DNA (924bp) protein (308aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3T6_9CLOT
L2_039_121G1_scaffold_40_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15293..16090
DNA (798bp) protein (266aa)
ABC-type antimicrobial peptide transport system, ATPase component (EC:3.6.3.-)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQI9_9CLOT
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CDD38248.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_40_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16087..17955
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A676_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38247.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
CARDB.
L2_039_121G1_scaffold_40_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17942..19291
DNA (1350bp) protein (450aa)
ABC-type antimicrobial peptide transport system permease component n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZBE6_9CLOT
ABC-type antimicrobial peptide transport system permease component {ECO:0000313|EMBL:CDD38246.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type antimicrobial peptide transport system, permease component
L2_039_121G1_scaffold_40_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19456..19917
DNA (462bp) protein (154aa)
Transcriptional regulators n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWE9_9CLOT
Transcriptional regulators {ECO:0000313|EMBL:CDD38245.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Transcriptional regulators
L2_039_121G1_scaffold_40_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19935..21680
DNA (1746bp) protein (582aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z3T1_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD38244.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type multidrug transport system, ATPase and permease components
L2_039_121G1_scaffold_40_19
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21664..23523
DNA (1860bp) protein (620aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. M62/1 RepID=D4CEB0_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE11992.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
ABC-type multidrug transport system, ATPase and permease components
L2_039_121G1_scaffold_40_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23710..24984
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38238.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Protein of unknown function (DUF2812).
L2_039_121G1_scaffold_40_21
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25077..25694
DNA (618bp) protein (206aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=D4CEB2_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
FliA/WhiG family RNA polymerase sigma factor
L2_039_121G1_scaffold_40_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25824..26387
DNA (564bp) protein (188aa)
peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin n=1 Tax=Clostridium sp. CAG:299 RepID=R6YQG4_9CLOT
Peroxiredoxin {ECO:0000313|EMBL:CDD38223.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_40_23
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26411..27715
DNA (1305bp) protein (435aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Clostridium sp. CAG:149 RepID=R5MFN6_9CLOT
L2_039_121G1_scaffold_40_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27806..28822
DNA (1017bp) protein (339aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z781_9CLOT
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDD39394.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_40_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29103..30611
DNA (1509bp) protein (503aa)
Predicted DNA-binding protein with the Helix-hairpin-helix motif n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZK7_9CLOT
Predicted DNA-binding protein with the Helix-hairpin-helix motif {ECO:0000313|EMBL:CDD39395.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L2_039_121G1_scaffold_40_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30631..31398
DNA (768bp) protein (256aa)
Putative DNA metabolism protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZEL4_9CLOT
Putative DNA metabolism protein {ECO:0000313|EMBL:CDD39396.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_40_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31529..31933
DNA (405bp) protein (135aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:299 RepID=R7A9H3_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDD39397.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
transcriptional regulator, GntR family
L2_039_121G1_scaffold_40_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31926..32825
DNA (900bp) protein (300aa)
ABC-type multidrug transport system n=1 Tax=Clostridium sp. CAG:299 RepID=R6YTT8_9CLOT
ABC-type multidrug transport system {ECO:0000313|EMBL:CDD39398.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type multidrug transport system, ATPase component
L2_039_121G1_scaffold_40_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32800..35076
DNA (2277bp) protein (759aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z787_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39399.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_40_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35146..35652
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39400.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
Displaying items 1-30 of 123 in total

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