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L2_039_121G1_scaffold_64

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_64_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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41..925
DNA (885bp) protein (295aa)
Negative regulator of beta-lactamase expression n=2 Tax=Clostridium RepID=D6DIW1_CLOSC
Negative regulator of beta-lactamase expression
Negative regulator of beta-lactamase expression {ECO:0000313|EMBL:CBK77635.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_039_121G1_scaffold_64_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1396..2760)
DNA (1365bp) protein (455aa)
Putative permease n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z7R9_9CLOT
Putative permease {ECO:0000313|EMBL:CDD44388.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Permeases
L2_039_121G1_scaffold_64_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2954..3589
DNA (636bp) protein (212aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted EndoIII-related endonuclease (EC:4.2.99.18)
Endonuclease III n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZLW2_9CLOT
L2_039_121G1_scaffold_64_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3714..5081
DNA (1368bp) protein (456aa)
Efflux transporter RND family MFP subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZE18_9CLOT
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CDD44390.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RND family efflux transporter MFP subunit
L2_039_121G1_scaffold_64_5
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5078..5881
DNA (804bp) protein (268aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
ABC-type antimicrobial peptide transport system, ATPase component n=2 Tax=Clostridium RepID=D6DEP2_CLOSC
ABC-type antimicrobial peptide transport system, ATPase component
L2_039_121G1_scaffold_64_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5871..7091
DNA (1221bp) protein (407aa)
Efflux ABC transporter permease protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXY0_9CLOT
Efflux ABC transporter permease protein {ECO:0000313|EMBL:CDD38785.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type antimicrobial peptide transport system, permease component
L2_039_121G1_scaffold_64_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7288..7716
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YS27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38783.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7713..8660
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38781.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8694..9566
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5D1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38779.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
conserved hypothetical protein TIGR00159
L2_039_121G1_scaffold_64_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9547..10932
DNA (1386bp) protein (462aa)
YbbR-like protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YS23_9CLOT
YbbR-like protein {ECO:0000313|EMBL:CDD38778.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
YbbR-like protein.
L2_039_121G1_scaffold_64_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10956..11219
DNA (264bp) protein (88aa)
Phosphotransferase System HPr (HPr) Family n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7Q0_9CLOT
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CDD38777.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Phosphotransferase System HPr (HPr) Family
L2_039_121G1_scaffold_64_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11250..12968
DNA (1719bp) protein (573aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCX0_9CLOT
L2_039_121G1_scaffold_64_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13103..14422
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXX1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38775.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14454..15650
DNA (1197bp) protein (399aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aminotransferase class I/II n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z5C6_9CLOT
Aminotransferase class I/II {ECO:0000313|EMBL:CDD38774.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_64_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15733..16860
DNA (1128bp) protein (376aa)
Sporulation integral membrane protein YtvI n=1 Tax=Clostridium sp. CAG:299 RepID=R6YS18_9CLOT
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CDD38773.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
sporulation integral membrane protein YtvI
L2_039_121G1_scaffold_64_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16832..17728)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCW6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38771.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
positive regulator for rhaBAD operon
L2_039_121G1_scaffold_64_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17924..18802
DNA (879bp) protein (293aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Diaminopimelate epimerase n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7P1_9CLOT
diaminopimelate epimerase
L2_039_121G1_scaffold_64_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18933..19745
DNA (813bp) protein (271aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXW3_9CLOT
L2_039_121G1_scaffold_64_19
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19829..20629
DNA (801bp) protein (267aa)
N-acetylmuramoyl-L-alanine amidase (EC:3.5.1.28)
N-acetylmuramoyl-L-alanine amidase n=3 Tax=Clostridium RepID=D6DEQ5_CLOSC
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:CCY82797.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_039_121G1_scaffold_64_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20747..22744
DNA (1998bp) protein (666aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
DNA ligase, NAD-dependent (EC:6.5.1.2)
DNA ligase n=3 Tax=Clostridium RepID=D6DEQ7_CLOSC
L2_039_121G1_scaffold_64_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22818..23750
DNA (933bp) protein (311aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCT6_9CLOT
L2_039_121G1_scaffold_64_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23804..24781
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38735.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24831..26240
DNA (1410bp) protein (470aa)
Transglutaminase-like enzymes putative cysteine proteases n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z586_9CLOT
Transglutaminase-like enzymes putative cysteine proteases {ECO:0000313|EMBL:CDD38734.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Transglutaminase-like enzymes, putative cysteine proteases
L2_039_121G1_scaffold_64_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26287..26577
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YRX1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38733.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26739..27344)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7L0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD38732.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_64_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27479..28582
DNA (1104bp) protein (368aa)
L-aminopeptidase/D-esterase (EC:3.4.11.19)
Peptidase family T4 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCT1_9CLOT
Peptidase family T4 {ECO:0000313|EMBL:CDD38731.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_64_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28687..29415)
DNA (729bp) protein (243aa)
Predicted glutamine amidotransferases n=1 Tax=Clostridium sp. CAG:299 RepID=R6YXT3_9CLOT
Predicted glutamine amidotransferases {ECO:0000313|EMBL:CDD38730.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted glutamine amidotransferases
L2_039_121G1_scaffold_64_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29673..31439
DNA (1767bp) protein (589aa)
ABC-type dipeptide transport system periplasmic component n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z582_9CLOT
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:CDD38729.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type dipeptide transport system, periplasmic component
L2_039_121G1_scaffold_64_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31636..33357
DNA (1722bp) protein (574aa)
ABC-type dipeptide transport system periplasmic component n=1 Tax=Clostridium sp. CAG:299 RepID=R6YRW6_9CLOT
ABC-type dipeptide transport system periplasmic component {ECO:0000313|EMBL:CDD38728.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type dipeptide transport system, periplasmic component
L2_039_121G1_scaffold_64_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33467..34387
DNA (921bp) protein (307aa)
ABC-type dipeptide/oligopeptide/nickel transport systems permease components n=1 Tax=Clostridium sp. CAG:299 RepID=R7A7K6_9CLOT
ABC-type dipeptide/oligopeptide/nickel transport systems permease components {ECO:0000313|EMBL:CDD38727.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Displaying items 1-30 of 91 in total

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