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L2_039_121G1_scaffold_66

Search features with annotation key words

Displaying items 1-30 of 86 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_66_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(66..2300)
DNA (2235bp) protein (745aa)
Alpha-galactosidase {ECO:0000313|EMBL:KFI90747.1}; EC=3.2.1.22 {ECO:0000313|EMBL:KFI90747.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
aga; alpha-galactosidase (EC:3.2.1.22)
Aga Alpha-galactosidase n=2 Tax=Bifidobacterium dentium RepID=D2Q7M1_BIFDB
L2_039_121G1_scaffold_66_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2448..2921)
DNA (474bp) protein (158aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Cytidine and deoxycytidylate deaminase zinc-binding region n=2 Tax=Bifidobacterium RepID=C0BVK9_9BIFI
CMP deaminase
L2_039_121G1_scaffold_66_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3042..5117
DNA (2076bp) protein (692aa)
Na+/H+ antiporter n=1 Tax=Bifidobacterium dentium ATCC 27678 RepID=B1S9J3_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32604.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
sodium:proton antiporter
L2_039_121G1_scaffold_66_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5126..5749)
DNA (624bp) protein (208aa)
Uncharacterized protein n=7 Tax=Bifidobacterium bifidum RepID=E4V972_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32605.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative pit accessory protein
L2_039_121G1_scaffold_66_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5767..6813)
DNA (1047bp) protein (349aa)
Phosphate/sulphate permease n=15 Tax=Bifidobacterium RepID=B3DSH1_BIFLD
Low-affinity inorganic phosphate transporter {ECO:0000313|EMBL:KFI90743.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
phosphate transport protein
L2_039_121G1_scaffold_66_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6998..7738)
DNA (741bp) protein (247aa)
Phospholipase/carboxylesterase n=4 Tax=Bifidobacterium dentium RepID=D2Q7M4_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32607.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
phospholipase/carboxylesterase
L2_039_121G1_scaffold_66_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8356..8937
DNA (582bp) protein (194aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
dcd; deoxycytidine triphosphate deaminase (EC:3.5.4.13)
Deoxycytidine triphosphate deaminase n=6 Tax=Bifidobacterium bifidum RepID=E3ERF4_BIFBS
L2_039_121G1_scaffold_66_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9033..12014)
DNA (2982bp) protein (994aa)
Calcium-transporting ATPase {ECO:0000313|EMBL:KFI90740.1}; EC=3.6.3.8 {ECO:0000313|EMBL:KFI90740.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ATPase P (EC:3.6.3.8)
Putative calcium-translocating P-type ATPase, PMCA-type n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC85_BIFBI
L2_039_121G1_scaffold_66_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12452..13183
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) RepID=A5CLZ0_CLAM3
Putative transcriptional regulator {ECO:0000313|EMBL:KFI90739.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
L2_039_121G1_scaffold_66_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13189..14142
DNA (954bp) protein (318aa)
Uncharacterized protein n=1 Tax=Propionibacterium propionicum (strain F0230a) RepID=I6X429_PROPF
Uncharacterized protein {ECO:0000313|EMBL:KFI90738.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
L2_039_121G1_scaffold_66_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14289..14534
DNA (246bp) protein (82aa)
antitoxin MazE n=1 Tax=Pantoea sp. SL1_M5 RepID=UPI0002553A30
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32613.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator/antitoxin MazE
L2_039_121G1_scaffold_66_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14534..14857
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CMU3_9FIRM
Toxin MazF {ECO:0000313|EMBL:KFI90736.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
L2_039_121G1_scaffold_66_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14928..16250)
DNA (1323bp) protein (441aa)
Transporter, major facilitator family protein n=1 Tax=Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 RepID=C0BRC8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32614.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
permease
L2_039_121G1_scaffold_66_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16288..17292
DNA (1005bp) protein (335aa)
SpoU rRNA methylase family protein {ECO:0000313|EMBL:KFI90734.1}; EC=2.1.1.185 {ECO:0000313|EMBL:KFI90734.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
SpoU rRNA methylase family protein n=7 Tax=Bifidobacterium RepID=E3ERF8_BIFBS
SpoU rRNA methylase family protein
L2_039_121G1_scaffold_66_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17513..18922)
DNA (1410bp) protein (470aa)
Uncharacterized protein n=2 Tax=Bifidobacterium dentium RepID=E0QA17_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ32616.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
lipopolysaccharide kinase, Kdo/WaaP family
L2_039_121G1_scaffold_66_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19116..20243)
DNA (1128bp) protein (376aa)
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFI90732.1}; EC=3.6.3.20 {ECO:0000313|EMBL:KFI90732.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ATP binding protein of ABC transporter for sugars n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZX26_BIFLJ
ABC transporter ATP-binding protein
L2_039_121G1_scaffold_66_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20718..21629)
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2HB14_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51211.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_121G1_scaffold_66_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22116..24587
DNA (2472bp) protein (824aa)
pkwA; putative serine/threonine-protein kinase (EC:2.7.11.1)
Putative serine/threonine-protein kinase {ECO:0000313|EMBL:AFL05414.1}; EC=2.7.11.1 {ECO:0000313|EMBL:AFL05414.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative serine/threonine-protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKK1_BIFBI
L2_039_121G1_scaffold_66_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24606..25712
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GP79_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23046.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_66_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26330..27871
DNA (1542bp) protein (514aa)
lytic transglycosylase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036141EC
collagen-binding domain
Uncharacterized protein {ECO:0000313|EMBL:ADO53974.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_66_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


27883..28833
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA small subunit methyltransferase A n=5 Tax=Bifidobacterium RepID=E3ERH1_BIFBS
ksgA; Dimethyladenosine transferase
L2_039_121G1_scaffold_66_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28830..29870
DNA (1041bp) protein (347aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CFC68
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L2_039_121G1_scaffold_66_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29912..30538
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M625_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16520.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_039_121G1_scaffold_66_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30630..32057)
DNA (1428bp) protein (476aa)
RNA nucleotidyltransferase (EC:2.7.7.72)
tRNA nucleotidyltransferase n=3 Tax=Bifidobacterium RepID=E3ERH4_BIFBS
RNA nucleotidyltransferase {ECO:0000313|EMBL:CDB22874.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_66_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32134..32787
DNA (654bp) protein (218aa)
Phosphohydrolase (Nudix family protein) n=8 Tax=Bifidobacterium RepID=E3ERH5_BIFBS
NTP pyrophosphohydrolase
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFL05421.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_039_121G1_scaffold_66_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32784..35063
DNA (2280bp) protein (760aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQY4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51220.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_039_121G1_scaffold_66_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35060..39496
DNA (4437bp) protein (1479aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNN7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22871.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_039_121G1_scaffold_66_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39690..40856
DNA (1167bp) protein (389aa)
Thioredoxin reductase {ECO:0000313|EMBL:KFI42121.1}; EC=1.8.1.9 {ECO:0000313|EMBL:KFI42121.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DWT8_BIFBI
L2_039_121G1_scaffold_66_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41323..42687)
DNA (1365bp) protein (455aa)
chromosome partitioning protein ParB n=1 Tax=Bifidobacterium bifidum RepID=UPI0003005F63
Chromosome partitioning protein ParB {ECO:0000313|EMBL:BAQ99031.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
chromosome partitioning protein
L2_039_121G1_scaffold_66_30
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42691..43674)
DNA (984bp) protein (328aa)
Chromosome partitioning protein ParA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GBQ1_9BIFI
Chromosome partitioning protein ParA {ECO:0000313|EMBL:CDB22868.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
parA; chromosome partitioning protein ParA
Displaying items 1-30 of 86 in total

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