ggKbase home page

L2_039_121G1_scaffold_147

Search features with annotation key words

Displaying items 1-30 of 141 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_147_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30..980
DNA (951bp) protein (317aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZK27_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41331.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_147_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1017..1316
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z510_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41330.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_147_3
unknown

Not on your lists

1267..1356
DNA (90bp) protein (30aa)

This feature has no annotations

L2_039_121G1_scaffold_147_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1384..2118
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41329.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_147_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2246..2989)
DNA (744bp) protein (248aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
RNA methyltransferase TrmH family group 3 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZ07_9CLOT
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDD41328.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_147_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2994..3506)
DNA (513bp) protein (171aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Mini-ribonuclease 3 n=1 Tax=Clostridium sp. CAG:299 RepID=R7AFB5_9CLOT
hypothetical protein
L2_039_121G1_scaffold_147_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3491..4900)
DNA (1410bp) protein (470aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZK21_9CLOT
L2_039_121G1_scaffold_147_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4969..5520)
DNA (552bp) protein (184aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z505_9CLOT
L2_039_121G1_scaffold_147_9
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5572..6525)
DNA (954bp) protein (318aa)
Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase n=3 Tax=Clostridiales RepID=D4MPI0_9FIRM
Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase
Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase {ECO:0000313|EMBL:CBL35666.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L2_039_121G1_scaffold_147_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7117..9114)
DNA (1998bp) protein (666aa)
Ferrous iron transporter B n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZK16_9CLOT
Ferrous iron transporter B {ECO:0000313|EMBL:CDD41321.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ferrous iron transporter FeoB
L2_039_121G1_scaffold_147_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9199..9411)
DNA (213bp) protein (71aa)
FeoA domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z501_9CLOT
FeoA domain protein {ECO:0000313|EMBL:CDD41320.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
FeoA domain.
L2_039_121G1_scaffold_147_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9615..10916)
DNA (1302bp) protein (434aa)
Putative signaling protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCV4_9CLOT
Putative signaling protein {ECO:0000313|EMBL:CDD41319.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
putative signaling protein
L2_039_121G1_scaffold_147_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11255..11497)
DNA (243bp) protein (81aa)
Putative nuclease sbcCD subunit C n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYZ6_9CLOT
Putative nuclease sbcCD subunit C {ECO:0000313|EMBL:CDD41318.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_147_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11982..12650
DNA (669bp) protein (223aa)
PAP2 superfamily n=1 Tax=Clostridium sp. CAG:299 RepID=R7AFA5_9CLOT
PAP2 superfamily {ECO:0000313|EMBL:CDD41317.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
PAP2 superfamily.
L2_039_121G1_scaffold_147_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12775..13794)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZK12_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41316.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
family 2 glycosyl transferase
L2_039_121G1_scaffold_147_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13810..14400)
DNA (591bp) protein (197aa)
HDIG domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z4Z5_9CLOT
HDIG domain protein {ECO:0000313|EMBL:CDD41315.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
uncharacterized domain HDIG
L2_039_121G1_scaffold_147_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14480..15769)
DNA (1290bp) protein (430aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCV0_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:CDD41314.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L2_039_121G1_scaffold_147_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15905..16915
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYZ1_9CLOT
L2_039_121G1_scaffold_147_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17048..17731)
DNA (684bp) protein (228aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AFA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41312.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SseB protein.
L2_039_121G1_scaffold_147_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17837..19291)
DNA (1455bp) protein (485aa)
NOL1/NOP2/sun family protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C7D2_9CLOT
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EFE14470.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
tRNA and rRNA cytosine-C5-methylases
L2_039_121G1_scaffold_147_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19408..20022
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZCT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41304.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_147_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20086..20460)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYY1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41303.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_147_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20560..22266)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AF93_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41302.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_147_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22841..24169)
DNA (1329bp) protein (443aa)
Transporter n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZJX6_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Na+-dependent transporters of the SNF family
L2_039_121G1_scaffold_147_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24185..25465)
DNA (1281bp) protein (427aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYW2_9CLOT
Na+/H+ antiporter family protein {ECO:0000313|EMBL:CDD41278.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
putative methionine transporter, NhaC family (TC 2.A.35.1.-)
L2_039_121G1_scaffold_147_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25607..26155
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z4W0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41275.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_147_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26780..27166
DNA (387bp) protein (129aa)
Iron dependent repressor DNA binding domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AF59_9CLOT
Iron dependent repressor DNA binding domain protein {ECO:0000313|EMBL:CDD41272.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DtxR family iron (metal) dependent repressor
L2_039_121G1_scaffold_147_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27251..27532)
DNA (282bp) protein (94aa)
Uncharacterized protein conserved in bacteria (DUF2325) n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZJW9_9CLOT
Uncharacterized protein conserved in bacteria (DUF2325) {ECO:0000313|EMBL:CDD41271.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Uncharacterized protein conserved in bacteria (DUF2325).
L2_039_121G1_scaffold_147_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27553..27984)
DNA (432bp) protein (144aa)
Flavodoxin n=1 Tax=Clostridium sp. CAG:299 RepID=R6YYV1_9CLOT
Flavodoxin {ECO:0000313|EMBL:CDD41268.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
flavodoxin, short chain
L2_039_121G1_scaffold_147_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28050..28661)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZJW4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD41266.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
Displaying items 1-30 of 141 in total

View Taxonomy