ggKbase home page

L2_039_121G1_scaffold_224

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_224_1
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

604..2040
DNA (1437bp) protein (479aa)
Resolvase domain protein n=1 Tax=Clostridium sp. CAG:149 RepID=R5LS99_9CLOT
Resolvase domain protein {ECO:0000313|EMBL:CCY82105.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
resolvase domain-containing protein
L2_039_121G1_scaffold_224_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2061..2603
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7APP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44522.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Mn-containing catalase
L2_039_121G1_scaffold_224_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2757..3002)
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z898_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44523.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_224_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3907..5265
DNA (1359bp) protein (453aa)
K+ transport systems NAD-binding component n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z1L4_9CLOT
K+ transport systems NAD-binding component {ECO:0000313|EMBL:CDD42223.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
K+ transport systems, NAD-binding component
L2_039_121G1_scaffold_224_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5278..6717
DNA (1440bp) protein (480aa)
Trk-type K+ transport systems membrane components n=1 Tax=Clostridium sp. CAG:299 RepID=R7AHZ4_9CLOT
Trk-type K+ transport systems membrane components {ECO:0000313|EMBL:CDD42222.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Trk-type K+ transport systems, membrane components
L2_039_121G1_scaffold_224_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6798..7223)
DNA (426bp) protein (142aa)
FOG: CBS domain n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZMK1_9CLOT
FOG: CBS domain {ECO:0000313|EMBL:CDD42221.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
FOG: CBS domain
L2_039_121G1_scaffold_224_7
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7281..7886)
DNA (606bp) protein (202aa)
Uncharacterised ACR, YkgG family COG1556 n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MTE5_9FIRM
Uncharacterised ACR, YkgG family COG1556.
Uncharacterised ACR, YkgG family COG1556 {ECO:0000313|EMBL:CBL37031.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L2_039_121G1_scaffold_224_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7975..9624)
DNA (1650bp) protein (550aa)
Alpha,alpha-phosphotrehalase {ECO:0000313|EMBL:EEG56098.1}; EC=3.2.1.93 {ECO:0000313|EMBL:EEG56098.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
alpha,alpha-phosphotrehalase (EC:3.2.1.93)
Alpha,alpha-phosphotrehalase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXU9_9CLOT
L2_039_121G1_scaffold_224_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9687..11615)
DNA (1929bp) protein (643aa)
PTS system trehalose-specific IIBC component {ECO:0000313|EMBL:EEG56097.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEG56097.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
PTS system trehalose-specific IIBC component n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXU8_9CLOT
PTS system trehalose-specific IIB component, Glc family (TC 4.A.1.2.4)/PTS system trehalose-specific IIC component, Glc family (TC 4.A.1.2.4)/PTS system trehalose-specific IIA component, Glc family (TC 4.A.1.2.4)
L2_039_121G1_scaffold_224_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11779..12507
DNA (729bp) protein (243aa)
Transcriptional regulator GntR family n=1 Tax=Clostridium sp. CAG:299 RepID=R6YVB2_9CLOT
Transcriptional regulator GntR family {ECO:0000313|EMBL:CDD37845.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
transcriptional regulator, GntR family
L2_039_121G1_scaffold_224_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12626..13405)
DNA (780bp) protein (260aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAB3_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDD37846.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
peptidase M23
L2_039_121G1_scaffold_224_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13446..14366)
DNA (921bp) protein (307aa)
SpoIID/LytB domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A511_9CLOT
SpoIID/LytB domain protein {ECO:0000313|EMBL:CDD37847.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SpoIID/LytB domain
L2_039_121G1_scaffold_224_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14538..16988)
DNA (2451bp) protein (817aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YPE5_9CLOT
L2_039_121G1_scaffold_224_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17072..20209)
DNA (3138bp) protein (1046aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
isoleucyl-tRNA synthetase (EC:6.1.1.5)
Isoleucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2L6_9CLOT
L2_039_121G1_scaffold_224_15
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20752..22407)
DNA (1656bp) protein (552aa)
Monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-) n=3 Tax=Clostridium RepID=D6DLF3_CLOSC
monosaccharide ABC transporter membrane protein, CUT2 family (TC 3.A.1.2.-)
Monosaccharide ABC transporter membrane protein CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CCY86117.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_039_121G1_scaffold_224_16
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22426..23934)
DNA (1509bp) protein (503aa)
monosaccharide ABC transporter ATP-binding protein, CUT2 family (TC 3.A.1.2.-) (EC:3.6.3.17)
ABC transporter, ATP-binding protein n=3 Tax=Clostridium RepID=D4CGT7_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFE11068.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L2_039_121G1_scaffold_224_17
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24100..25476)
DNA (1377bp) protein (459aa)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) n=2 Tax=Clostridium RepID=D6DLF6_CLOSC
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
Monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CBK78530.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_039_121G1_scaffold_224_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25626..26603)
DNA (978bp) protein (326aa)
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2M1_9CLOT
Monosaccharide ABC transporter substrate-binding protein CUT2 family (TC 3.A.1.2.-) {ECO:0000313|EMBL:CDD37854.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
monosaccharide ABC transporter substrate-binding protein, CUT2 family (TC 3.A.1.2.-)
L2_039_121G1_scaffold_224_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26590..28350)
DNA (1761bp) protein (587aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Predicted signal transduction protein with a C-terminal ATPase domain (EC:2.7.13.3)
Predicted signal transduction protein with a C-terminal ATPase domain n=1 Tax=Clostridium sp. CAG:299 RepID=R6YVC0_9CLOT
L2_039_121G1_scaffold_224_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28347..29951)
DNA (1605bp) protein (535aa)
Response regulator receiver domain protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAC4_9CLOT
Response regulator receiver domain protein {ECO:0000313|EMBL:CDD37856.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
two component transcriptional regulator, AraC family
L2_039_121G1_scaffold_224_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30143..31603
DNA (1461bp) protein (487aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7A520_9CLOT
L2_039_121G1_scaffold_224_22
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31752..32489)
DNA (738bp) protein (246aa)
Probable transcriptional regulatory protein CLS_20940 n=3 Tax=Clostridium RepID=D6DIP8_CLOSC
conserved hypothetical protein TIGR01033
Probable transcriptional regulatory protein BN500_00005 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
L2_039_121G1_scaffold_224_23
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32622..34004)
DNA (1383bp) protein (461aa)
MATE efflux family protein n=3 Tax=Clostridium RepID=U2D995_CLOSY
MATE efflux family protein {ECO:0000313|EMBL:ERI76081.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
mate efflux family protein
L2_039_121G1_scaffold_224_24
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34028..35389)
DNA (1362bp) protein (454aa)
Hemolysins and related proteins containing CBS domains n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DIP7_CLOSC
Hemolysins and related proteins containing CBS domains
Hemolysins and related proteins containing CBS domains {ECO:0000313|EMBL:CBK77571.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_039_121G1_scaffold_224_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35549..35890)
DNA (342bp) protein (114aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
mRNA interferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAP9_9CLOT
transcriptional modulator of MazE/toxin MazF
L2_039_121G1_scaffold_224_26
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35991..37208)
DNA (1218bp) protein (406aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Clostridium sp. CAG:149 RepID=R5MMH2_9CLOT
L2_039_121G1_scaffold_224_27
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37184..38731)
DNA (1548bp) protein (516aa)
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region n=4 Tax=Clostridiales RepID=D6DIP6_CLOSC
yjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region
YjeF C-terminal region, hydroxyethylthiazole kinase-related/yjeF N-terminal region {ECO:0000313|EMBL:CBK77570.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_039_121G1_scaffold_224_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38753..39118)
DNA (366bp) protein (122aa)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237180};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphopantethiene--protein transferase domain (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIT9_9CLOT
L2_039_121G1_scaffold_224_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39115..39792)
DNA (678bp) protein (226aa)
Redox-sensing transcriptional repressor Rex n=1 Tax=Clostridium sp. CAG:299 RepID=R7ADY1_9CLOT
Redox-sensing transcriptional repressor Rex {ECO:0000256|HAMAP-Rule:MF_01131}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
AT-rich DNA-binding protein
L2_039_121G1_scaffold_224_30
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39997..42012
DNA (2016bp) protein (672aa)
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZIS6_9CLOT
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDD40881.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATPase components of ABC transporters with duplicated ATPase domains
Displaying items 1-30 of 45 in total

View Taxonomy