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L2_039_121G1_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_271_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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191..337
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZE06_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39181.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_121G1_scaffold_271_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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494..1921
DNA (1428bp) protein (476aa)
Six-Cys-in-45 modification radical SAM protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A8X2_9CLOT
Six-Cys-in-45 modification radical SAM protein {ECO:0000313|EMBL:CDD39182.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
radical SAM protein
L2_039_121G1_scaffold_271_3
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1908..4031
DNA (2124bp) protein (708aa)
Export membrane protein SecD n=1 Tax=Clostridium sp. M62/1 RepID=D4C911_9CLOT
Export membrane protein SecD {ECO:0000313|EMBL:EFE13998.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
protein translocase subunit secF/protein translocase subunit secD
L2_039_121G1_scaffold_271_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4021..5160
DNA (1140bp) protein (380aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7A8X8_9CLOT
L2_039_121G1_scaffold_271_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5207..5479
DNA (273bp) protein (91aa)
Preprotein translocase subunit n=1 Tax=Clostridium sp. CAG:299 RepID=R6YT70_9CLOT
Preprotein translocase subunit {ECO:0000313|EMBL:CDD39188.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
protein translocase subunit yajC
L2_039_121G1_scaffold_271_6
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5688..6371
DNA (684bp) protein (228aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEM7_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEQ58273.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
GntR family transcriptional regulator
L2_039_121G1_scaffold_271_7
Bacillus okhensis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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6400..6882
DNA (483bp) protein (161aa)
TRAP transporter, DctQ-like membrane protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DLG6_CLOSY
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:KHF38742.1}; TaxID=333138 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus okhensis.;"
C4-dicarboxylate ABC transporter, permease protein
L2_039_121G1_scaffold_271_8
Synergistes sp. 3_1_syn1, Synergistes, Synergistales, Synergistia, Synergistetes, Bacteria

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6879..8168
DNA (1290bp) protein (430aa)
TRAP transporter, DctM subunit n=1 Tax=Synergistes sp. 3_1_syn1 RepID=G9PTN0_9BACT
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EHL69566.1}; TaxID=457415 species="Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Synergistes.;" source="Synergistes sp. 3_1_syn1.;"
TRAP transporter, DctM subunit
L2_039_121G1_scaffold_271_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8199..9179
DNA (981bp) protein (327aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PZR2_9FIRM
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CDC15207.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
D-isomer specific 2-hydroxyacid dehydrogenase protein
L2_039_121G1_scaffold_271_10
Acidaminococcus sp. BV3L6, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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9235..10269
DNA (1035bp) protein (345aa)
TRAP transporter solute receptor, DctP family n=1 Tax=Acidaminococcus sp. BV3L6 RepID=U2VUD1_9FIRM
TRAP transporter solute receptor, DctP family {ECO:0000313|EMBL:ERL16156.1}; TaxID=1111120 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. BV3L6.;"
tripartite ATP-independent periplasmic transporter solute receptor, DctP family
L2_039_121G1_scaffold_271_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10310..10666
DNA (357bp) protein (119aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZKS7_9CLOT
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:CDD43999.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
L2_039_121G1_scaffold_271_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10683..12047
DNA (1365bp) protein (455aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EEM6_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EEQ58272.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L2_039_121G1_scaffold_271_13
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12057..12821
DNA (765bp) protein (255aa)
2-dehydro-3-deoxyglucarate aldolase (EC:4.1.2.20)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HNL6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97059.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
L2_039_121G1_scaffold_271_14
unknown

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comp(12716..12934)
DNA (219bp) protein (73aa)

This feature has no annotations

L2_039_121G1_scaffold_271_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13116..14201
DNA (1086bp) protein (362aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z6K9_9CLOT
L2_039_121G1_scaffold_271_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14286..15965
DNA (1680bp) protein (560aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZ13_9CLOT
L2_039_121G1_scaffold_271_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16035..17723
DNA (1689bp) protein (563aa)
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase large subunit biosynthetic type n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZE16_9CLOT
Acetolactate synthase large subunit biosynthetic type {ECO:0000313|EMBL:CDD39191.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_271_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17779..18861
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7A8Y3_9CLOT
L2_039_121G1_scaffold_271_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18887..20050
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Phosphoglycerate dehydrogenase and related dehydrogenases n=1 Tax=Clostridium sp. CAG:299 RepID=R6YT75_9CLOT
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CDD39193.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_271_20
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20200..21474)
DNA (1275bp) protein (425aa)
Peptidase, M23 family n=1 Tax=Clostridium sp. M62/1 RepID=D4C901_9CLOT
Peptidase, M23 family {ECO:0000313|EMBL:EFE13988.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Membrane proteins related to metalloendopeptidases
L2_039_121G1_scaffold_271_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21577..22062
DNA (486bp) protein (162aa)
Putative phenylacetic acid degradation protein PaaD n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z6L8_9CLOT
Putative phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:CDD39199.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
uncharacterized domain 1
L2_039_121G1_scaffold_271_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22049..22897)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZ20_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39200.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Metal-dependent hydrolases of the beta-lactamase superfamily III
L2_039_121G1_scaffold_271_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23056..23541
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZE25_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39201.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Protein of unknown function (DUF1700).
L2_039_121G1_scaffold_271_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23553..24062
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7A8Z2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD39202.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_039_121G1_scaffold_271_25
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24160..25914)
DNA (1755bp) protein (585aa)
Hydrogenases, Fe-only {ECO:0000313|EMBL:CBL36805.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CBL36805.1};; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenases, Fe-only n=3 Tax=Clostridiales RepID=D4MSR9_9FIRM
L2_039_121G1_scaffold_271_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25908..27749)
DNA (1842bp) protein (614aa)
sudA3; sulfide dehydrogenase subunit alpha (EC:1.8.-.- 1.18.1.2)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZE35_9CLOT
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CDD39211.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_121G1_scaffold_271_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28006..28635
DNA (630bp) protein (210aa)
Chromate transport protein ChrA n=1 Tax=Clostridium sp. CAG:299 RepID=R7A900_9CLOT
Chromate transport protein ChrA {ECO:0000313|EMBL:CDD39212.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Chromate transport protein ChrA
L2_039_121G1_scaffold_271_28
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

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28632..29192
DNA (561bp) protein (187aa)
Chromate transport protein ChrA n=4 Tax=Clostridiales RepID=D4MSR7_9FIRM
Chromate transport protein ChrA
Chromate transport protein ChrA {ECO:0000313|EMBL:CBL36803.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L2_039_121G1_scaffold_271_29
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29262..30392)
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:81 RepID=R5GAH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY09476.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
conserved hypothetical protein
L2_039_121G1_scaffold_271_30
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30915..32303
DNA (1389bp) protein (463aa)
Putative cryptic C4-dicarboxylate transporter DcuD n=1 Tax=Clostridium sp. CAG:81 RepID=R5FWN8_9CLOT
Putative cryptic C4-dicarboxylate transporter DcuD {ECO:0000313|EMBL:CCY09475.1}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
putative anaerobic C4-dicarboxylate transporter
Displaying items 1-30 of 47 in total

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