ggKbase home page

L2_039_121G1_scaffold_305

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_305_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2..244)
DNA (243bp) protein (81aa)
Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family n=1 Tax=Enterobacteriaceae bacterium (strain FGI 57) RepID=L0M2Y9_ENTBF
Uncharacterized protein {ECO:0000313|EMBL:KFI95482.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
quinate dehydrogenase
L2_039_121G1_scaffold_305_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(379..1299)
DNA (921bp) protein (307aa)
Putative binding-protein dependent transport system integral membrane component n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C5L3_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31008.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative binding-protein dependent transport system integral membrane component
L2_039_121G1_scaffold_305_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1301..2254)
DNA (954bp) protein (318aa)
Putative integral membrane transport protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C5L4_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31007.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative integral membrane transport protein
L2_039_121G1_scaffold_305_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2378..3721)
DNA (1344bp) protein (448aa)
Substrate-binding transport protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C5L5_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31006.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
substrate-binding transport protein
L2_039_121G1_scaffold_305_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4077..5129
DNA (1053bp) protein (351aa)
Regulatory protein, LacI n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZWV0_BIFLJ
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31005.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
LacI family transcriptional regulator
L2_039_121G1_scaffold_305_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5219..6880)
DNA (1662bp) protein (554aa)
Lincomycin resistance protein LmrB n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XX29_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31004.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
major facilitator transporter
L2_039_121G1_scaffold_305_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7861..9240)
DNA (1380bp) protein (460aa)
Major facilitator superfamily MFS_1 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GSM0_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31003.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
major facilitator superfamily protein
L2_039_121G1_scaffold_305_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9605..10399)
DNA (795bp) protein (265aa)
transcriptional regulator n=1 Tax=Agromyces italicus RepID=UPI0003B52ECB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31002.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
PadR family transcriptional regulator
L2_039_121G1_scaffold_305_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10399..11448)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B66068
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31001.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter permease
L2_039_121G1_scaffold_305_10
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11623..12645)
DNA (1023bp) protein (341aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AVS7_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31000.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
laci-type response repressor
L2_039_121G1_scaffold_305_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12967..13095
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=E8MKN8_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30999.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_305_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13213..13344
DNA (132bp) protein (44aa)
Uncharacterized protein n=14 Tax=Bifidobacterium RepID=V6Y0U5_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30998.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_305_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13834..15045
DNA (1212bp) protein (404aa)
LacI family transcriptional regulator n=1 Tax=Streptomyces acidiscabies RepID=UPI00028A2587
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30997.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative LacI family transcriptional regulator
L2_039_121G1_scaffold_305_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14892..15980)
DNA (1089bp) protein (363aa)
Putative LacI family transcriptional regulator n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7BT77_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30996.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative LacI family transcriptional regulator
L2_039_121G1_scaffold_305_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16129..16920)
DNA (792bp) protein (264aa)
Putative hydrolase n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7CFQ9_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30995.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative hydrolase
L2_039_121G1_scaffold_305_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17022..17903)
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Streptomyces acidiscabies RepID=UPI000289DC65
ABC transporter, permease protein {ECO:0000313|EMBL:KFI91571.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter permease
L2_039_121G1_scaffold_305_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17924..18871)
DNA (948bp) protein (316aa)
Putative integral membrane transport protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C5L4_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30993.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
putative integral membrane transport protein
L2_039_121G1_scaffold_305_18
Bifidobacterium saguini, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19066..19200)
DNA (135bp) protein (45aa)
Family 1 extracellular solute-binding protein {ECO:0000313|EMBL:KFI92301.1}; TaxID=1437607 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saguini DSM 23967.;"
L2_039_121G1_scaffold_305_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19212..20114)
DNA (903bp) protein (301aa)
Substrate-binding transport protein n=1 Tax=Streptomyces bingchenggensis (strain BCW-1) RepID=D7C5L5_STRBB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30992.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
substrate-binding transport protein
L2_039_121G1_scaffold_305_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20202..20396)
DNA (195bp) protein (65aa)
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30991.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
L2_039_121G1_scaffold_305_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20581..20721)
DNA (141bp) protein (47aa)
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30990.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
L2_039_121G1_scaffold_305_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20779..22098)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NGU1_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30989.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_305_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22380..23267)
DNA (888bp) protein (296aa)
hypothetical protein n=1 Tax=Nocardiopsis ganjiahuensis RepID=UPI0003480DA7
Xylose isomerase {ECO:0000313|EMBL:KFI91577.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
xylose isomerase
L2_039_121G1_scaffold_305_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23398..25056)
DNA (1659bp) protein (553aa)
Xylan 1,4-beta-xylosidase {ECO:0000313|EMBL:KFI91578.1}; EC=3.2.1.37 {ECO:0000313|EMBL:KFI91578.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
xylan 1,4-beta-xylosidase (EC:3.2.1.37)
Xylan 1,4-beta-xylosidase n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4J2H2_BIFAP
L2_039_121G1_scaffold_305_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25136..27250)
DNA (2115bp) protein (705aa)
Alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase n=1 Tax=Gardnerella vaginalis JCP7275 RepID=S4HBQ0_GARVA
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30986.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
L2_039_121G1_scaffold_305_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27370..28500)
DNA (1131bp) protein (377aa)
Glycerate kinase {ECO:0000313|EMBL:KFI91580.1}; EC=2.7.1.31 {ECO:0000313|EMBL:KFI91580.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Glycerate kinase n=1 Tax=Bifidobacterium sp. 12_1_47BFAA RepID=E5Y156_9BIFI
glycerate kinase
L2_039_121G1_scaffold_305_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28695..29816
DNA (1122bp) protein (374aa)
LacI-type transcriptional regulator n=1 Tax=Bifidobacterium longum E18 RepID=V6XY96_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30984.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator
L2_039_121G1_scaffold_305_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30487..31494)
DNA (1008bp) protein (336aa)
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KFI91582.1}; EC=1.1.1.79 {ECO:0000313|EMBL:KFI91582.1};; EC=1.1.1.81 {ECO:0000313|EMBL:KFI91582.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
2-hydroxyacid dehydrogenase (EC:1.1.1.95)
2-hydroxyacid dehydrogenase n=1 Tax=Streptomyces sp. Wigar10 RepID=UPI000378ACEC
L2_039_121G1_scaffold_305_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31735..32214)
DNA (480bp) protein (160aa)
Putative transcriptional regulator, MerR family n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GN22_BIFLS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30982.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator, MerR family
L2_039_121G1_scaffold_305_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32462..33469
DNA (1008bp) protein (336aa)
Oxidoreductase, aldo/keto reductase family protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VC51_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ30981.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Oxidoreductase
Displaying items 1-30 of 41 in total

View Taxonomy