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L2_039_121G1_scaffold_325

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_325_1
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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3..830
DNA (828bp) protein (276aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Dihydroorotase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I749_BIFBI
pyrC; dihydroorotase
L2_039_121G1_scaffold_325_2
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

874..1839
DNA (966bp) protein (322aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Orotidine 5'-phosphate decarboxylase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXT8_BIFBI
pyrF1; Orotidine 5'-phosphate decarboxylase
L2_039_121G1_scaffold_325_3
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1987..2817
DNA (831bp) protein (277aa)
Dihydroorotate dehydrogenase electron transfer subunit {ECO:0000313|EMBL:KFI91989.1}; EC=1.18.1.2 {ECO:0000313|EMBL:KFI91989.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Dihydroorotate dehydrogenase electron transfer subunit n=7 Tax=Bifidobacterium RepID=I3WHV6_BIFBI
pyrK; dihydroorotate dehydrogenase electron transfer subunit
L2_039_121G1_scaffold_325_4
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2820..3767
DNA (948bp) protein (316aa)
Dihydroorotate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00224}; Short=DHOD {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHODase {ECO:0000256|HAMAP-Rule:MF_00224};; Short=DHOdehase {ECO:0000256|HAMAP-Rule:MF_00224};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_00224};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
pyrD; dihydroorotate dehydrogenase, catalytic subunit pyrD (EC:1.3.98.1)
Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H9S1_BIFBI
L2_039_121G1_scaffold_325_5
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3852..4550
DNA (699bp) protein (233aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=2.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216337};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
Orotate phosphoribosyltransferase n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A5W4_BIFAD
orotate phosphoribosyltransferase
L2_039_121G1_scaffold_325_6
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4605..6212)
DNA (1608bp) protein (536aa)
ABC transporter {ECO:0000313|EMBL:KFI91992.1}; EC=3.6.3.17 {ECO:0000313|EMBL:KFI91992.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC transporter related protein n=2 Tax=Bifidobacterium bifidum RepID=E3EQB9_BIFBS
ABC transporter
L2_039_121G1_scaffold_325_7
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6688..7857
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4INV0_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31356.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_325_8
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7854..8417
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IJG5_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31357.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_325_9
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8542..10239)
DNA (1698bp) protein (566aa)
PASTA domain protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BHR6_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31358.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_325_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10506..11507
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU67_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00423.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L2_039_121G1_scaffold_325_11
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12145..13068)
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZU68_BIFLJ
LysR family transcriptional regulator {ECO:0000313|EMBL:KFI91997.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
LysR family transcriptional regulator
L2_039_121G1_scaffold_325_12
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13147..14238)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Clostridium ultunense Esp RepID=M1Z3N5_9CLOT
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31362.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
beta-eliminating lyase family protein
L2_039_121G1_scaffold_325_13
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14461..15225)
DNA (765bp) protein (255aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Actinomyces vaccimaxillae RepID=UPI0003B48879
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31363.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC transporter
L2_039_121G1_scaffold_325_14
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15270..15947)
DNA (678bp) protein (226aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Isoptericola variabilis (strain 225) RepID=F6FRQ5_ISOV2
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31364.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
polar amino acid ABC transporter inner membrane subunit
L2_039_121G1_scaffold_325_15
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16025..16912)
DNA (888bp) protein (296aa)
Cystine ABC transporter cystine-binding protein n=1 Tax=Arthrobacter globiformis NBRC 12137 RepID=H0QR32_ARTGO
Family 3 extracellular solute-binding protein {ECO:0000313|EMBL:KFI92001.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ABC-type amino acid transport system, cystine-binding protein
L2_039_121G1_scaffold_325_16
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17248..18276
DNA (1029bp) protein (343aa)
Teicoplanin resistance protein n=2 Tax=Bifidobacterium bifidum RepID=I3WIC1_BIFBI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31366.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
vanZ; teicoplanin resistance protein
L2_039_121G1_scaffold_325_17
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18418..20334
DNA (1917bp) protein (639aa)
ABC transporter {ECO:0000313|EMBL:KFI92003.1}; EC=3.6.3.44 {ECO:0000313|EMBL:KFI92003.1};; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MJZ5_9FIRM
ABC-type multidrug transport system, ATPase and permease components
L2_039_121G1_scaffold_325_18
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20334..22271
DNA (1938bp) protein (646aa)
ATP-binding cassette, subfamily B, bacterial n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MKU5_9FIRM
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31368.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
ABC-type multidrug transport system, ATPase and permease components
L2_039_121G1_scaffold_325_19
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22268..22897)
DNA (630bp) protein (210aa)
HAD-superfamily hydrolase, subfamily IA, variant 3 n=3 Tax=Bifidobacterium bifidum RepID=E3EP17_BIFBS
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31369.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
haloacid dehalogenase
L2_039_121G1_scaffold_325_20
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22970..24832)
DNA (1863bp) protein (621aa)
Sugar kinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GLH9_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31370.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
sugar kinase
L2_039_121G1_scaffold_325_21
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24953..25555
DNA (603bp) protein (201aa)
nqo; ribosyldihydronicotinamide dehydrogenase (EC:1.10.99.2)
NAD(P)H oxidoreductase n=6 Tax=Bifidobacterium RepID=E4NXA3_BIFBP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31371.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
L2_039_121G1_scaffold_325_22
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26109..26780
DNA (672bp) protein (224aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y0F0_BIFBU
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31372.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_325_23
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26970..27368)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPB8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31373.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
hypothetical protein
L2_039_121G1_scaffold_325_24
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27452..27838)
DNA (387bp) protein (129aa)
methyltransferase n=1 Tax=Bifidobacterium breve RepID=UPI0002D4F4B8
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31374.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
methyltransferase domain protein
L2_039_121G1_scaffold_325_25
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28056..28358)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKR9_BIFBR
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31376.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
Hypothetical protein
L2_039_121G1_scaffold_325_26
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28559..29014
DNA (456bp) protein (152aa)
Transcriptional regulator, MerR family n=4 Tax=Bifidobacterium dentium RepID=D2QAA7_BIFDB
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31377.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
MerR family transcriptional regulator
L2_039_121G1_scaffold_325_27
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29075..29836
DNA (762bp) protein (254aa)
Carboxymuconolactone decarboxylase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GCM8_9BIFI
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31378.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
carboxymuconolactone decarboxylase
L2_039_121G1_scaffold_325_28
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30196..30516
DNA (321bp) protein (107aa)
Transcriptional regulator, ArsR family n=1 Tax=Bifidobacterium asteroides (strain PRL2011) RepID=K4IL83_BIFAP
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31379.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
transcriptional regulator, ArsR family
L2_039_121G1_scaffold_325_29
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30734..31867)
DNA (1134bp) protein (378aa)
Methionine synthase, vitamin-B12 independent n=2 Tax=Bifidobacterium RepID=C0BTE5_9BIFI
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:KFI91071.1}; TaxID=158787 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii.;"
hypothetical protein
L2_039_121G1_scaffold_325_30
Bifidobacterium scardovii, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32098..33525
DNA (1428bp) protein (476aa)
Udp-glucose pyrophosphorylase n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AQA4_BIFLN
Bifidobacterium scardovii JCM 12489 = DSM 13734 DNA, complete genome {ECO:0000313|EMBL:BAQ31381.1}; TaxID=1150461 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium scardovii JCM 12489 = DSM 13734.;"
udp-glucose pyrophosphorylase
Displaying items 1-30 of 38 in total

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