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L2_039_121G1_scaffold_438

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_438_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(1..285)
DNA (285bp) protein (95aa)
30S ribosomal protein S1 n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C1R2_BIFBI
30S ribosomal protein S1
30S ribosomal protein S1 {ECO:0000313|EMBL:AAN24800.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L2_039_121G1_scaffold_438_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(433..1308)
DNA (876bp) protein (292aa)
Bifunctional protein FolD n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQT5_BIFBS
folD; Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1371..2465
DNA (1095bp) protein (365aa)
Zinc-binding lipo protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHG7_BIFBI
adcA; zinc-binding lipo protein
Zinc-binding lipo protein {ECO:0000313|EMBL:EKF16351.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_039_121G1_scaffold_438_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2633..3523
DNA (891bp) protein (297aa)
phnC; phosphonates import ATP-binding protein (EC:3.6.3.28)
Solute-binding protein of ABC transporter system for metals n=4 Tax=Bifidobacterium bifidum RepID=E4P159_BIFBP
Phosphonates import ATP-binding protein {ECO:0000313|EMBL:EKF16350.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L2_039_121G1_scaffold_438_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3520..4356
DNA (837bp) protein (279aa)
Zinc/manganese transport system, permease protein n=8 Tax=Bifidobacterium RepID=E3EQT2_BIFBS
zinc/manganese ABC transporter permease
ABC 3 transport family protein {ECO:0000313|EMBL:EFR50121.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_039_121G1_scaffold_438_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4367..4843)
DNA (477bp) protein (159aa)
ispF; 2C-methyl-D-erythritol 2,4-cyclodiphosphatesynthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=4 Tax=Bifidobacterium bifidum RepID=I3WHG4_BIFBI
L2_039_121G1_scaffold_438_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4862..5458)
DNA (597bp) protein (199aa)
Transcriptional regulator, CarD family n=8 Tax=Bifidobacterium RepID=E3EQT0_BIFBS
CarD family transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:EKE49923.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_121G1_scaffold_438_8
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5586..7841
DNA (2256bp) protein (752aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
glgB; 1,4-alpha-glucan branching protein (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=6 Tax=Bifidobacterium RepID=E4P155_BIFBP
L2_039_121G1_scaffold_438_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7855..8574
DNA (720bp) protein (240aa)
Two-component response regulator n=8 Tax=Bifidobacterium RepID=E3EQS8_BIFBS
mtrA; DNA-binding response regulator
DNA-binding response regulator MtrA {ECO:0000313|EMBL:EFR50117.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L2_039_121G1_scaffold_438_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8574..9662
DNA (1089bp) protein (363aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Sensory transduction protein kinase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQS7_BIFBS
Sensory transduction protein kinase
L2_039_121G1_scaffold_438_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9756..10151
DNA (396bp) protein (132aa)
Peptidase S24-like protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V923_BIFBI
Peptidase S24-like protein {ECO:0000313|EMBL:EFR50115.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
peptidase S24-like domain
L2_039_121G1_scaffold_438_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10258..10974)
DNA (717bp) protein (239aa)
Amidophosphoribosyl transferase-like protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WHF8_BIFBI
amidophosphoribosyl transferase-like protein
Amidophosphoribosyl transferase-like protein {ECO:0000313|EMBL:AFL04321.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_039_121G1_scaffold_438_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10978..11805)
DNA (828bp) protein (276aa)
Phosphomannomutase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I5A3_BIFBI
Phosphomannomutase {ECO:0000313|EMBL:EKE49929.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
pmmC; phosphomannomutase
L2_039_121G1_scaffold_438_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11938..12312
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=I3WHF6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42794.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_039_121G1_scaffold_438_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12385..13896)
DNA (1512bp) protein (504aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H7F8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE49931.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_039_121G1_scaffold_438_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13893..17054)
DNA (3162bp) protein (1054aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQS1_BIFBS
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52963.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
hypothetical protein
L2_039_121G1_scaffold_438_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17088..17387)
DNA (300bp) protein (100aa)
Transcriptional regulator WhiB n=9 Tax=Bifidobacterium RepID=E3EQS0_BIFBS
transcription factor WhiB
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_121G1_scaffold_438_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17669..19144
DNA (1476bp) protein (492aa)
Membrane-bound protein n=3 Tax=Bifidobacterium bifidum RepID=I3WHF2_BIFBI
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:ADO52961.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19273..21222
DNA (1950bp) protein (650aa)
Cell division protein, FtsK/SpoIIIE n=5 Tax=Bifidobacterium bifidum RepID=I3WHF1_BIFBI
Cell division protein, FtsK/SpoIIIE {ECO:0000313|EMBL:AFL04314.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
cell division protein, FtsK/SpoIIIE
L2_039_121G1_scaffold_438_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21338..21616
DNA (279bp) protein (93aa)
Transcriptional regulator WhiB n=7 Tax=Bifidobacterium bifidum RepID=E3EQR7_BIFBS
whmD; cell division transcription factor WhmD
Transcriptional regulator WhiB {ECO:0000256|HAMAP-Rule:MF_01479}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L2_039_121G1_scaffold_438_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21751..23286)
DNA (1536bp) protein (512aa)
Sensory transduction protein kinase n=3 Tax=Bifidobacterium bifidum RepID=E3EQR6_BIFBS
Sensory transduction protein kinase
Sensory transduction protein kinase {ECO:0000313|EMBL:ADO52958.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23375..24262
DNA (888bp) protein (296aa)
HemolysinIII-like protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P141_BIFBP
hemolysinIII-like protein
Hemolysin-like conserved hypothetical membrane-spanning protein {ECO:0000313|EMBL:ADO52957.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24745..25332)
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HQQ7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:BAQ97924.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L2_039_121G1_scaffold_438_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26450..26596)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EQR3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52955.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26801..27280)
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=8 Tax=Bifidobacterium RepID=E3EQR2_BIFBS
greA; transcription elongation factor
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00003926}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_438_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27339..27743)
DNA (405bp) protein (135aa)
fkbP; FKBP-type peptidyl-prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Peptidyl-prolyl cis-trans isomerase n=6 Tax=Bifidobacterium RepID=E4P138_BIFBP
L2_039_121G1_scaffold_438_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27904..29364)
DNA (1461bp) protein (487aa)
sdaA; l-serine dehydratase SdaA (EC:4.3.1.17)
SdaA L-serine dehydratase {ECO:0000313|EMBL:KFI42782.1}; EC=4.3.1.17 {ECO:0000313|EMBL:KFI42782.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
SdaA L-serine dehydratase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P137_BIFBP
L2_039_121G1_scaffold_438_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29541..30110)
DNA (570bp) protein (190aa)
4-hydroxybenzoate polyprenyl transferase and related prenyl transferase n=5 Tax=Bifidobacterium bifidum RepID=I3WHE0_BIFBI
4-hydroxybenzoate polyprenyl transferase and related prenyl transferase
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52951.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_121G1_scaffold_438_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30310..31308)
DNA (999bp) protein (333aa)
exopolyphosphatase (EC:4.2.3.4)
Exopolyphosphatase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P135_BIFBP
Exopolyphosphatase {ECO:0000313|EMBL:CDB22335.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_121G1_scaffold_438_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31458..32045)
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WHD7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04300.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 32 in total

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