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L2_039_121G1_scaffold_2233

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_2233_1
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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172..591
DNA (420bp) protein (140aa)
Sigma-70, region 4 n=2 Tax=Clostridiales RepID=B0G8Z1_9FIRM
Sigma-70, region 4 {ECO:0000313|EMBL:EDR46145.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L2_039_121G1_scaffold_2233_2
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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595..837
DNA (243bp) protein (81aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=C0EE65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX69096.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L2_039_121G1_scaffold_2233_3
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1122..1358
DNA (237bp) protein (79aa)
DNA binding domain, excisionase family n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G8Z4_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:EDR46148.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
DNA binding domain, excisionase family
L2_039_121G1_scaffold_2233_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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1380..2846
DNA (1467bp) protein (489aa)
Phage integrase family protein n=1 Tax=Clostridium difficile Y358 RepID=T4G9P1_CLODI
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDR46149.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Phage integrase family.
L2_039_121G1_scaffold_2233_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3281..3907)
DNA (627bp) protein (209aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9N2_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EEC90534.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L2_039_121G1_scaffold_2233_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4088..5341
DNA (1254bp) protein (418aa)
Putative permease n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9N3_9FIRM
Putative permease {ECO:0000313|EMBL:EEC90535.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
uracil-xanthine permease
L2_039_121G1_scaffold_2233_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5375..5920)
DNA (546bp) protein (182aa)
DJ-1 family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9N4_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:EEC90536.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DJ-1 family protein
L2_039_121G1_scaffold_2233_8
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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5984..6505
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9N6_9FIRM
Acid-resistance membrane protein {ECO:0000313|EMBL:CRH81981.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L2_039_121G1_scaffold_2233_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6483..7274)
DNA (792bp) protein (264aa)
HAD hydrolase, family IIB n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9N7_9FIRM
HAD hydrolase, family IIB {ECO:0000313|EMBL:EEC90539.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted hydrolases of the HAD superfamily
L2_039_121G1_scaffold_2233_10
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7430..7735)
DNA (306bp) protein (102aa)
Uncharacterized protein n=3 Tax=unclassified Erysipelotrichaceae (miscellaneous) RepID=G1VXW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32484.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
transposase IS111A/IS1328/IS1533
Displaying 10 items

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