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L2_039_121G1_scaffold_178

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_178_1
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1..399
DNA (399bp) protein (133aa)
RNA polymerase sigma factor, sigma-70 family n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2PLQ2_9FIRM
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ERK45061.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L2_039_121G1_scaffold_178_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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389..628
DNA (240bp) protein (80aa)
Sigma-70 protein n=4 Tax=Firmicutes RepID=E5VLJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32845.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
putative conjugative transposon proteinTn916-like, CTn1-Orf3
L2_039_121G1_scaffold_178_3
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1170..2396
DNA (1227bp) protein (409aa)
Site-specific recombinase, phage integrase family n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZU34_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDM86861.1}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
Site-specific recombinase XerC
L2_039_121G1_scaffold_178_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2610..5162
DNA (2553bp) protein (851aa)
Putative ATP-dependent chaperone protein ClpB n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W6_9FIRM
Putative ATP-dependent chaperone protein ClpB {ECO:0000313|EMBL:EEC91163.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
clpB; ATP-dependent chaperone ClpB
L2_039_121G1_scaffold_178_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5128..5955
DNA (828bp) protein (276aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cobB3; NAD-dependent protein deacetylase (EC:3.5.1.-)
NAD-dependent protein deacetylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W5_9FIRM
L2_039_121G1_scaffold_178_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6000..6539
DNA (540bp) protein (180aa)
Serine acetyltransferase {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.30 {ECO:0000256|PIRNR:PIRNR000441};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cysE; Serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W4_9FIRM
L2_039_121G1_scaffold_178_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6548..7849
DNA (1302bp) protein (434aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91160.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_178_8
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7800..8330)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=[Eubacterium] cylindroides T2-87 RepID=D4JEK6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK88628.1}; TaxID=717960 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides T2-87.;"
L2_039_121G1_scaffold_178_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8431..9387
DNA (957bp) protein (319aa)
Putative phage head-tail adaptor n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W2_9FIRM
Putative phage head-tail adaptor {ECO:0000313|EMBL:EEC91159.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
FOG: FHA domain
L2_039_121G1_scaffold_178_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9359..10705
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91158.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Protein kinase domain.
L2_039_121G1_scaffold_178_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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10702..11847
DNA (1146bp) protein (382aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91157.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_178_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11851..12312
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7W0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC91157.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_178_13
Firmicutes bacterium M10-2, Firmicutes, Bacteria

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comp(12830..13036)
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium M10-2 RepID=R9LRD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS60891.1}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
L2_039_121G1_scaffold_178_14
unknown

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comp(13029..13199)
DNA (171bp) protein (57aa)

This feature has no annotations

L2_039_121G1_scaffold_178_15
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13587..14051)
DNA (465bp) protein (155aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Y7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS12962.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
transcriptional regulator
L2_039_121G1_scaffold_178_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14209..14427
DNA (219bp) protein (73aa)
DNA-binding helix-turn-helix protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Y8_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EDS12963.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L2_039_121G1_scaffold_178_17
Streptococcus agalactiae, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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14424..15131
DNA (708bp) protein (236aa)
antirepressor n=1 Tax=Fructobacillus fructosus RepID=UPI0002195A4B
prophage LambdaSa2, antirepressor protein
Prophage LambdaSa2, antirepressor protein, putative {ECO:0000313|EMBL:AAN00739.1}; TaxID=208435 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R).;"
L2_039_121G1_scaffold_178_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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15198..17126
DNA (1929bp) protein (643aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45310.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
transposase-like Mu
L2_039_121G1_scaffold_178_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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17119..18066
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45309.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative ATPase, transposase-like protein
L2_039_121G1_scaffold_178_20
unknown

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18170..18427
DNA (258bp) protein (86aa)

This feature has no annotations

L2_039_121G1_scaffold_178_21
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18496..18759
DNA (264bp) protein (88aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCC3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05931.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L2_039_121G1_scaffold_178_22
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18781..19152
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Clostridium papyrosolvens C7 RepID=U4QWR4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EPR07779.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
hypothetical protein
L2_039_121G1_scaffold_178_23
unknown

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19163..19342
DNA (180bp) protein (60aa)

This feature has no annotations

L2_039_121G1_scaffold_178_24
unknown

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19564..19710
DNA (147bp) protein (49aa)

This feature has no annotations

L2_039_121G1_scaffold_178_25
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19689..20312
DNA (624bp) protein (208aa)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) n=1 Tax=Clostridium leptum CAG:27 RepID=R6N9M0_9CLOT
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) {ECO:0000313|EMBL:CDC05024.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
L2_039_121G1_scaffold_178_26
unknown

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20272..20439
DNA (168bp) protein (56aa)

This feature has no annotations

L2_039_121G1_scaffold_178_27
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20525..20782
DNA (258bp) protein (86aa)
Transcriptional regulator, AbrB family n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P6Z5_9FIRM
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:EDS12970.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
MazE family transcriptional regulator
L2_039_121G1_scaffold_178_28
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20772..21404
DNA (633bp) protein (211aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FCC0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05928.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein predicted by Glimmer/Critica
L2_039_121G1_scaffold_178_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21422..21871
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45301.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_121G1_scaffold_178_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21871..22191
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XHM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45300.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Mor transcription activator family.
Displaying items 1-30 of 90 in total

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