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L2_039_121G1_scaffold_310

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_310_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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139..1047
DNA (909bp) protein (303aa)
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EEC90264.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEC90264.1};; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA polymerase III, delta subunit (EC:2.7.7.7)
DNA polymerase III, delta subunit (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB8_9FIRM
L2_039_121G1_scaffold_310_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1147..2724
DNA (1578bp) protein (526aa)
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:EEC90265.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEC90265.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM
hypothetical protein
L2_039_121G1_scaffold_310_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2941..3237
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90266.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_310_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3497..3709
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90266.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_310_5
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4120..4380)
DNA (261bp) protein (87aa)
RelB/DinJ family addiction module antitoxin n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JES3_9FIRM
RelB/DinJ family addiction module antitoxin {ECO:0000313|EMBL:EES76694.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
toxin-antitoxin system, antitoxin component
L2_039_121G1_scaffold_310_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


comp(4550..4813)
DNA (264bp) protein (88aa)
30S ribosomal protein S20 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC3_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S20P
L2_039_121G1_scaffold_310_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4926..5855
DNA (930bp) protein (310aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC4_9FIRM
L2_039_121G1_scaffold_310_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5866..7668
DNA (1803bp) protein (601aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Elongation factor 4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC5_9FIRM
GTP-binding protein LepA
L2_039_121G1_scaffold_310_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7668..8747
DNA (1080bp) protein (360aa)
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:EEC90272.1}; EC=1.3.99.22 {ECO:0000313|EMBL:EEC90272.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC6_9FIRM
L2_039_121G1_scaffold_310_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


8822..9103
DNA (282bp) protein (94aa)
30S ribosomal protein S15 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC7_9FIRM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S15P
L2_039_121G1_scaffold_310_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9171..11312
DNA (2142bp) protein (714aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC8_9FIRM
polynucleotide phosphorylase/polyadenylase
L2_039_121G1_scaffold_310_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11387..12775
DNA (1389bp) protein (463aa)
Putative dipeptidase {ECO:0000313|EMBL:EEC90275.1}; EC=3.4.13.- {ECO:0000313|EMBL:EEC90275.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
dipeptidase, putative (EC:3.5.1.18)
Putative dipeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAC9_9FIRM
L2_039_121G1_scaffold_310_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12777..13418
DNA (642bp) protein (214aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD0_9FIRM
trmB; tRNA (guanine-N(7)-)-methyltransferase
L2_039_121G1_scaffold_310_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13411..13749
DNA (339bp) protein (113aa)
Thioredoxin n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD1_9FIRM
Thioredoxin {ECO:0000313|EMBL:EEC90277.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Thioredoxin.
L2_039_121G1_scaffold_310_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13743..14411
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90278.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_310_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14413..15720
DNA (1308bp) protein (436aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000313|EMBL:EEC90279.1}; EC=6.3.2.8 {ECO:0000313|EMBL:EEC90279.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD3_9FIRM
L2_039_121G1_scaffold_310_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15808..17022
DNA (1215bp) protein (405aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90280.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
AAA+ superfamily ATPase
L2_039_121G1_scaffold_310_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17400..17750
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90281.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_310_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17752..18285
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90282.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_310_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18288..19295
DNA (1008bp) protein (336aa)
Catabolite control protein A n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD7_9FIRM
Catabolite control protein A {ECO:0000313|EMBL:EEC90283.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, LacI family
L2_039_121G1_scaffold_310_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19340..19795
DNA (456bp) protein (152aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Endoribonuclease YbeY n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD8_9FIRM
conserved hypothetical protein TIGR00043
L2_039_121G1_scaffold_310_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19776..20123
DNA (348bp) protein (116aa)
Diacylglycerol kinase (EC:2.7.1.107)
Prokaryotic diacylglycerol kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAD9_9FIRM
Prokaryotic diacylglycerol kinase {ECO:0000313|EMBL:EEC90285.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_310_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20136..21044
DNA (909bp) protein (303aa)
GTPase Era n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE0_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
GTP-binding protein Era
L2_039_121G1_scaffold_310_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21034..21756
DNA (723bp) protein (241aa)
DNA repair protein RecO n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE1_9FIRM
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA repair protein RecO
L2_039_121G1_scaffold_310_25
unknown

Not on your lists

21756..21860
DNA (105bp) protein (35aa)

This feature has no annotations

L2_039_121G1_scaffold_310_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21845..22144
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90288.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_310_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


22285..23715
DNA (1431bp) protein (477aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glyS; Glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE3_9FIRM
L2_039_121G1_scaffold_310_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23715..25481
DNA (1767bp) protein (589aa)
DNA primase {ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|SAAS:SAAS00051045};; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA primase (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE4_9FIRM
dnaG; DNA primase
L2_039_121G1_scaffold_310_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25486..26715
DNA (1230bp) protein (410aa)
RNA polymerase sigma factor SigA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE6_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RNA polymerase, sigma 70 subunit, RpoD
L2_039_121G1_scaffold_310_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26715..27368
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAE7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90260.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
trmK; tRNA (adenine(22)-N(1))-methyltransferase
Displaying items 1-30 of 48 in total

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