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L2_039_121G1_scaffold_356

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_356_1
Treponema socranskii, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(113..811)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Treponema socranskii subsp. paredis ATCC 35535 RepID=S3JK02_TRESO
Uncharacterized protein {ECO:0000313|EMBL:EPF25405.1}; TaxID=1125701 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema socranskii subsp. paredis ATCC 35535.;"
ABC transporter permease
L2_039_121G1_scaffold_356_2
Clostridium sp. CAG:307, Tenericutes, Bacteria

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comp(804..1850)
DNA (1047bp) protein (349aa)
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=1262795 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:307.;"
ABC transporter ATP-binding protein n=1 Tax=Clostridium sp. CAG:307 RepID=R7GJA5_9CLOT
methionine ABC transporter ATP-binding protein
L2_039_121G1_scaffold_356_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1866..2009)
DNA (144bp) protein (48aa)
Uncharacterized protein (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89297.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_356_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2075..2995)
DNA (921bp) protein (307aa)
Transcriptional regulator, LysR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ3_9FIRM
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EEC89298.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LysR family transcriptional regulator
L2_039_121G1_scaffold_356_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3092..4297)
DNA (1206bp) protein (402aa)
Amidohydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ4_9FIRM
Amidohydrolase {ECO:0000313|EMBL:EEC89299.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
amidohydrolase
L2_039_121G1_scaffold_356_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4423..5205)
DNA (783bp) protein (261aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ5_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEC89300.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L2_039_121G1_scaffold_356_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5207..5947)
DNA (741bp) protein (247aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
ABC transporter, ATP-binding protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ6_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEC89301.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_356_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5951..6607)
DNA (657bp) protein (219aa)
ABC transporter, permease protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ7_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEC89302.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L2_039_121G1_scaffold_356_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6666..7601)
DNA (936bp) protein (312aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCZ8_9FIRM
Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EEC89303.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted permeases
L2_039_121G1_scaffold_356_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7759..8922
DNA (1164bp) protein (388aa)
Lactaldehyde reductase {ECO:0000313|EMBL:EEC89308.1}; EC=1.1.1.77 {ECO:0000313|EMBL:EEC89308.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Lactaldehyde reductase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD03_9FIRM
hypothetical protein
L2_039_121G1_scaffold_356_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8995..9864)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD26_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89331.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
NlpC/P60 family.
L2_039_121G1_scaffold_356_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10170..10508)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89332.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_356_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10508..10846)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89333.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_356_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10988..11350
DNA (363bp) protein (121aa)
Transcriptional regulator, BlaI/MecI/CopY family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD29_9FIRM
Transcriptional regulator, BlaI/MecI/CopY family {ECO:0000313|EMBL:EEC89334.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Penicillinase repressor.
L2_039_121G1_scaffold_356_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11347..12570
DNA (1224bp) protein (408aa)
Peptidase, M56 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD30_9FIRM
Peptidase, M56 family {ECO:0000313|EMBL:EEC89335.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
peptidase M56
L2_039_121G1_scaffold_356_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12795..13889)
DNA (1095bp) protein (365aa)
Methionine adenosyltransferase {ECO:0000313|EMBL:EEC89336.1}; EC=2.5.1.6 {ECO:0000313|EMBL:EEC89336.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
methionine adenosyltransferase (EC:2.5.1.6)
Methionine adenosyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD31_9FIRM
L2_039_121G1_scaffold_356_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14156..14785)
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89337.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Uncharacterised ACR, YkgG family COG1556.
L2_039_121G1_scaffold_356_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14789..17821)
DNA (3033bp) protein (1011aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00002518}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00002518};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
dnaE; DNA polymerase III DnaE (EC:2.7.7.7)
DNA polymerase III subunit alpha n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD33_9FIRM
L2_039_121G1_scaffold_356_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17876..18808)
DNA (933bp) protein (311aa)
DHH family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD34_9FIRM
DHH family protein {ECO:0000313|EMBL:EEC89339.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Exopolyphosphatase-related proteins
L2_039_121G1_scaffold_356_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(18801..20000)
DNA (1200bp) protein (400aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD35_9FIRM
L2_039_121G1_scaffold_356_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20013..20306)
DNA (294bp) protein (98aa)
Helix-turn-helix protein, YlxM/p13 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD36_9FIRM
UPF0122 protein EUBIFOR_02115 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_356_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20306..21265)
DNA (960bp) protein (320aa)
Signal recognition particle receptor FtsY n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD37_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
signal recognition particle-docking protein FtsY
L2_039_121G1_scaffold_356_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(21265..24192)
DNA (2928bp) protein (976aa)
Chromosome partition protein Smc n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD38_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
chromosome segregation protein SMC
L2_039_121G1_scaffold_356_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24295..24957
DNA (663bp) protein (221aa)
Channel protein, hemolysin III family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD39_9FIRM
Channel protein, hemolysin III family {ECO:0000313|EMBL:EEC89344.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted membrane protein, hemolysin III homolog
L2_039_121G1_scaffold_356_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24996..26069)
DNA (1074bp) protein (358aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
RIP metalloprotease RseP (EC:3.4.24.-)
RIP metalloprotease RseP n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD40_9FIRM
L2_039_121G1_scaffold_356_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26081..26848)
DNA (768bp) protein (256aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
CDP-diglyceride synthetase (EC:2.7.7.41)
Phosphatidate cytidylyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD41_9FIRM
L2_039_121G1_scaffold_356_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(26845..27537)
DNA (693bp) protein (231aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Undecaprenyl pyrophosphate synthetase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD42_9FIRM
L2_039_121G1_scaffold_356_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27578..28123)
DNA (546bp) protein (182aa)
Ribosome-recycling factor n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD43_9FIRM
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ribosome recycling factor
L2_039_121G1_scaffold_356_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28135..28845)
DNA (711bp) protein (237aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD44_9FIRM
L2_039_121G1_scaffold_356_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(28948..29838)
DNA (891bp) protein (297aa)
Elongation factor Ts n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CD45_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
translation elongation factor Ts (EF-Ts)
Displaying items 1-30 of 43 in total

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