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L2_039_121G1_scaffold_685

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_685_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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94..864
DNA (771bp) protein (257aa)
Cof-like hydrolase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C821_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EEC91112.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
HAD-superfamily hydrolase, subfamily IIB
L2_039_121G1_scaffold_685_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(904..2976)
DNA (2073bp) protein (691aa)
Putative translation elongation factor G (Fragment) n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH6_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:EEC89231.1}; Flags: Fragment;; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
fusA1; elongation factor G
L2_039_121G1_scaffold_685_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2987..3658)
DNA (672bp) protein (224aa)
Ankyrin repeat protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH5_9FIRM
Ankyrin repeat protein {ECO:0000313|EMBL:EEC89230.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
FOG: Ankyrin repeat
L2_039_121G1_scaffold_685_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3880..4170)
DNA (291bp) protein (97aa)
Glyoxalase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH4_9FIRM
Glyoxalase family protein {ECO:0000313|EMBL:EEC89229.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
L2_039_121G1_scaffold_685_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4222..6288)
DNA (2067bp) protein (689aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribonuclease R n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH3_9FIRM
Ribonuclease R
L2_039_121G1_scaffold_685_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6335..6565)
DNA (231bp) protein (77aa)
Preprotein translocase, SecG subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH2_9FIRM
Preprotein translocase, SecG subunit {ECO:0000313|EMBL:EEC89227.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
secG; preprotein translocase subunit SecG
L2_039_121G1_scaffold_685_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6621..7391)
DNA (771bp) protein (257aa)
Putative HAD hydrolase, TIGR01457 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH1_9FIRM
Putative HAD hydrolase, TIGR01457 family {ECO:0000313|EMBL:EEC89226.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
TIGR01457 family HAD hydrolase
L2_039_121G1_scaffold_685_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7416..7961)
DNA (546bp) protein (182aa)
Transcription termination/antitermination protein NusG n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDH0_9FIRM
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcription antitermination protein nusG
L2_039_121G1_scaffold_685_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7972..8169)
DNA (198bp) protein (66aa)
Preprotein translocase, SecE subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG9_9FIRM
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:EEC89224.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
protein translocase subunit secE/sec61 gamma
L2_039_121G1_scaffold_685_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8373..8969)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89222.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_685_11
Firmicutes bacterium CAG:308, Firmicutes, Bacteria

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comp(9043..9759)
DNA (717bp) protein (239aa)
RNA methyltransferase TrmH family group 3 n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7A9W3_9FIRM
RNA methyltransferase TrmH family group 3 {ECO:0000313|EMBL:CDD50166.1}; TaxID=1263016 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:308.;"
TrmH family RNA methyltransferase
L2_039_121G1_scaffold_685_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9756..10142)
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Mini-ribonuclease 3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG4_9FIRM
ribonuclease III
L2_039_121G1_scaffold_685_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10142..11473)
DNA (1332bp) protein (444aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Cysteine--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG3_9FIRM
cysteinyl-tRNA synthetase
L2_039_121G1_scaffold_685_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11545..12222)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89217.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_685_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12215..12391)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89216.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_685_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12524..13564)
DNA (1041bp) protein (347aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDG0_9FIRM
L2_039_121G1_scaffold_685_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13731..14225
DNA (495bp) protein (165aa)
Transcriptional regulator, AsnC family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF9_9FIRM
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EEC89214.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
AsnC family transcriptional regulator
L2_039_121G1_scaffold_685_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14225..15385
DNA (1161bp) protein (387aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEC89213.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEC89213.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Aminotransferase, class I/II n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF8_9FIRM
aromatic amino acid aminotransferase
L2_039_121G1_scaffold_685_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15440..17134)
DNA (1695bp) protein (565aa)
Phosphoglucomutase {ECO:0000313|EMBL:EEC89212.1}; EC=5.4.2.2 {ECO:0000313|EMBL:EEC89212.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
alpha-phosphoglucomutase (EC:5.4.2.8 5.4.2.2)
Phosphoglucomutase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF7_9FIRM
L2_039_121G1_scaffold_685_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17201..17467)
DNA (267bp) protein (89aa)
Phosphocarrier protein HPr {ECO:0000313|EMBL:EEC89211.1}; EC=2.7.11.- {ECO:0000313|EMBL:EEC89211.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Phosphocarrier protein HPr n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF6_9FIRM
Phosphotransferase System HPr (HPr) Family
L2_039_121G1_scaffold_685_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17529..17954)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89210.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_685_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17954..19393)
DNA (1440bp) protein (480aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Glycogen synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF4_9FIRM
glgA; Glycogen synthase, ADP-glucose transglucosylase
L2_039_121G1_scaffold_685_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19393..20508)
DNA (1116bp) protein (372aa)
Glucose-1-phosphate adenylyltransferase, GlgD subunit {ECO:0000313|EMBL:EEC89208.1}; EC=2.7.7.27 {ECO:0000313|EMBL:EEC89208.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF3_9FIRM
L2_039_121G1_scaffold_685_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20511..21650)
DNA (1140bp) protein (380aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDF2_9FIRM
Displaying 24 items

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