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L2_039_121G1_scaffold_875

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_875_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..856
DNA (855bp) protein (285aa)
Transposase Int-Tn n=6 Tax=Clostridium difficile RepID=T2TE91_CLODI
int1; Integrase Tn1549-like, CTn4-Orf34
Integrase {ECO:0000313|EMBL:CKG93422.1}; Integrase Tn1549-like, CTn4-Orf34 {ECO:0000313|EMBL:CEJ97653.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L2_039_121G1_scaffold_875_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1168..1986
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90887.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_875_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2007..3815)
DNA (1809bp) protein (603aa)
Putative Na/Pi-cotransporter II-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q1_9FIRM
Putative Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EEC90888.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Na+/phosphate symporter
L2_039_121G1_scaffold_875_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(3985..4626)
DNA (642bp) protein (214aa)
Peptidase, M50 family {ECO:0000313|EMBL:EEC90889.1}; EC=3.4.24.- {ECO:0000313|EMBL:EEC90889.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Peptidase, M50 family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q2_9FIRM
peptidase M50
L2_039_121G1_scaffold_875_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4619..5722)
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q3_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
50S ribosome-binding GTPase family protein
L2_039_121G1_scaffold_875_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5741..5932)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90891.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_875_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5935..6789)
DNA (855bp) protein (285aa)
folD; methenyltetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q5_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_875_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(6789..7238)
DNA (450bp) protein (150aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q6_9FIRM
D-tyrosyl-tRNA(Tyr) deacylase
L2_039_121G1_scaffold_875_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7235..7720)
DNA (486bp) protein (162aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q7_9FIRM
L2_039_121G1_scaffold_875_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(7713..8228)
DNA (516bp) protein (172aa)
Nitroreductase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q8_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EEC90895.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Nitroreductase
L2_039_121G1_scaffold_875_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(8316..9380)
DNA (1065bp) protein (355aa)
Cell wall-binding repeat protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8Q9_9FIRM
Cell wall-binding repeat protein {ECO:0000313|EMBL:EEC90896.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
NlpC/P60 family.
L2_039_121G1_scaffold_875_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(9515..10261)
DNA (747bp) protein (249aa)
Triosephosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517}; Short=TIM {ECO:0000256|HAMAP-Rule:MF_00147};; EC=5.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00147, ECO:0000256|RuleBase:RU000517};; Triose-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00147}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R0_9FIRM
L2_039_121G1_scaffold_875_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10280..11464)
DNA (1185bp) protein (395aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R1_9FIRM
L2_039_121G1_scaffold_875_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11572..12045)
DNA (474bp) protein (158aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribosomal RNA large subunit methyltransferase H n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R2_9FIRM
hypothetical protein
L2_039_121G1_scaffold_875_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(12042..12752)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90900.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted ATPase
L2_039_121G1_scaffold_875_16
Firmicutes bacterium CAG:536, Firmicutes, Bacteria

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comp(12859..14826)
DNA (1968bp) protein (656aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:536 RepID=R5ZA88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA33714.1}; TaxID=1263028 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:536.;"
Predicted permease.
L2_039_121G1_scaffold_875_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(14819..15586)
DNA (768bp) protein (256aa)
Putative bacteriocin export ABC transporter, lactococcin 972 group n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R6_9FIRM
Putative bacteriocin export ABC transporter, lactococcin 972 group {ECO:0000313|EMBL:EEC90814.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_039_121G1_scaffold_875_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(15678..16667)
DNA (990bp) protein (330aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R7_9FIRM
Signal transduction histidine kinase
L2_039_121G1_scaffold_875_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16694..17359)
DNA (666bp) protein (222aa)
Response regulator receiver domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8R8_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEC90816.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
Displaying 19 items

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