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L2_039_121G1_scaffold_897

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_121G1_scaffold_897_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(89..256)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90136.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_897_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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299..1180
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAS5_9FIRM
Putative membrane protein {ECO:0000313|EMBL:EEC90135.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
multidrug transporter
L2_039_121G1_scaffold_897_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1177..1491)
DNA (315bp) protein (105aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC89161.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_897_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1778..2632)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90138.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_897_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(2781..3815)
DNA (1035bp) protein (345aa)
Threonine dehydrogenase and related Zn-dependent dehydrogenases (EC:1.1.1.1)
GroES-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAS8_9FIRM
GroES-like protein {ECO:0000313|EMBL:EEC90139.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_897_6
unknown

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comp(4090..4257)
DNA (168bp) protein (56aa)

This feature has no annotations

L2_039_121G1_scaffold_897_7
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(4428..4754)
DNA (327bp) protein (109aa)
Transcriptional regulator, HxlR family n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NWM1_9FIRM
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EEF92374.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
transcriptional regulator, MarR family
L2_039_121G1_scaffold_897_8
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4900..5253
DNA (354bp) protein (118aa)
Cupin domain protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NWM2_9FIRM
Cupin domain protein {ECO:0000313|EMBL:EEF92375.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
hypothetical protein
L2_039_121G1_scaffold_897_9
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5416..5628)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5T8Q7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ55376.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
membrane protein
L2_039_121G1_scaffold_897_10
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5625..6095)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QVH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK42747.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
sortase
L2_039_121G1_scaffold_897_11
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6092..6331)
DNA (240bp) protein (80aa)
Transcriptional regulator n=1 Tax=Clostridium sp. CAG:75 RepID=R5SWY7_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:CCZ55374.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
AcrR; transcriptional regulator
L2_039_121G1_scaffold_897_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6382..6957)
DNA (576bp) protein (192aa)
Phosphoglycerate mutase family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAT5_9FIRM
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEC90099.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phosphoglycerate mutase
L2_039_121G1_scaffold_897_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6970..7560)
DNA (591bp) protein (197aa)
Putative repressor LexA n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAT6_9FIRM
Putative repressor LexA {ECO:0000313|EMBL:EEC90100.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phage repressor like XRE family transcriptional regulator
L2_039_121G1_scaffold_897_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7713..8972
DNA (1260bp) protein (420aa)
ImpB/MucB/SamB family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAT7_9FIRM
ImpB/MucB/SamB family protein {ECO:0000313|EMBL:EEC90101.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UmuC-like DNA repair protein
L2_039_121G1_scaffold_897_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8981..9307)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90104.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_897_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9378..9806)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90105.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_121G1_scaffold_897_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9969..11339)
DNA (1371bp) protein (457aa)
Arylsulfatase {ECO:0000313|EMBL:EEC90106.1}; EC=3.1.6.- {ECO:0000313|EMBL:EEC90106.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Arylsulfatase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU2_9FIRM
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L2_039_121G1_scaffold_897_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11378..11665)
DNA (288bp) protein (96aa)
DNA-binding protein HU n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM
DNA-binding protein HU {ECO:0000313|EMBL:EEC90107.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Bacterial nucleoid DNA-binding protein
L2_039_121G1_scaffold_897_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11667..12662)
DNA (996bp) protein (332aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU4_9FIRM
L2_039_121G1_scaffold_897_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12676..13983)
DNA (1308bp) protein (436aa)
GTPase Der n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU5_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
GTP-binding protein Der
L2_039_121G1_scaffold_897_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14004..14654)
DNA (651bp) protein (217aa)
(d)CMP kinase {ECO:0000256|SAAS:SAAS00249031}; EC=2.7.4.25 {ECO:0000256|SAAS:SAAS00249031};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Cytidylate kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU6_9FIRM
cytidylate kinase
L2_039_121G1_scaffold_897_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14666..15436)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90111.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_121G1_scaffold_897_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15503..16063)
DNA (561bp) protein (187aa)
Elongation factor P n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU8_9FIRM
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
translation elongation factor P (EF-P)
Displaying 23 items

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