ggKbase home page

L2_039_239G1_scaffold_8

Search features with annotation key words

Displaying items 1-30 of 214 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_8_1
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(102..1010)
DNA (909bp) protein (303aa)
Site-specific recombinase, phage integrase family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GAJ2_9ACTN
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEA90704.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
phage integrase
L2_039_239G1_scaffold_8_2
Collinsella tanakaei, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

1189..1497
DNA (309bp) protein (103aa)
Putative uncharacterized protein n=1 Tax=Collinsella tanakaei YIT 12063 RepID=G1WIX1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EGX70598.1}; TaxID=742742 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella tanakaei YIT 12063.;"
L2_039_239G1_scaffold_8_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1508..1723
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GQV9_BIFLS
hypothetical protein
Holin {ECO:0000313|EMBL:KHD95011.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
L2_039_239G1_scaffold_8_4
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

1723..2772
DNA (1050bp) protein (350aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E769_9ACTN
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EBA40578.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
Lysin, N-acetylmuramoyl-L-alanine amidase
L2_039_239G1_scaffold_8_5
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3081..4121)
DNA (1041bp) protein (347aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBB5_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEA90433.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_8_6
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(4877..5284)
DNA (408bp) protein (136aa)
GtrA-like protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBB7_9ACTN
GtrA-like protein {ECO:0000313|EMBL:EEA90436.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_8_7
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5549..5941)
DNA (393bp) protein (131aa)
GtrA-like protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBB9_9ACTN
GtrA-like protein {ECO:0000313|EMBL:EEA90437.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_8_8
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(5981..6436)
DNA (456bp) protein (152aa)
YhcH/YjgK/YiaL family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBC0_9ACTN
YhcH/YjgK/YiaL family protein {ECO:0000313|EMBL:EEA90438.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_8_9
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(6618..7760)
DNA (1143bp) protein (381aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBC1_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90439.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
dioxygenase-like 2-nitropropane dioxygenase
L2_039_239G1_scaffold_8_10
unknown

Not on your lists

comp(7750..8583)
DNA (834bp) protein (278aa)

This feature has no annotations

L2_039_239G1_scaffold_8_11
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8854..9846)
DNA (993bp) protein (331aa)
NOL1/NOP2/sun family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBC7_9ACTN
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EEA90389.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Fmu (Sun) domain-containing protein
L2_039_239G1_scaffold_8_12
unknown

Not on your lists

comp(10462..10623)
DNA (162bp) protein (54aa)

This feature has no annotations

L2_039_239G1_scaffold_8_13
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11145..11891)
DNA (747bp) protein (249aa)
Cobalt transport protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD2_9ACTN
Cobalt transport protein {ECO:0000313|EMBL:EEA90394.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
cobalt transport protein
L2_039_239G1_scaffold_8_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(11884..13692)
DNA (1809bp) protein (603aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD3_9ACTN
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA90395.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ABC transporter
L2_039_239G1_scaffold_8_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13726..14304)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90396.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_8_16
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14676..15587)
DNA (912bp) protein (304aa)
Diacylglycerol kinase catalytic domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD6_9ACTN
Diacylglycerol kinase catalytic domain protein {ECO:0000313|EMBL:EEA90398.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
diacylglycerol kinase catalytic subunit
L2_039_239G1_scaffold_8_17
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

15682..16815
DNA (1134bp) protein (378aa)
Ribonuclease D {ECO:0000256|HAMAP-Rule:MF_01899}; Short=RNase D {ECO:0000256|HAMAP-Rule:MF_01899};; EC=3.1.13.5 {ECO:0000256|HAMAP-Rule:MF_01899};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ribonuclease D (EC:3.1.13.5)
Ribonuclease D n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD7_9ACTN
L2_039_239G1_scaffold_8_18
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

16927..17694
DNA (768bp) protein (256aa)
Cof-like hydrolase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD8_9ACTN
Cof-like hydrolase {ECO:0000313|EMBL:EEA90400.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
cof family hydrolase
L2_039_239G1_scaffold_8_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(17886..18329)
DNA (444bp) protein (148aa)
Transcriptional regulator, Fur family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBD9_9ACTN
Transcriptional regulator, Fur family {ECO:0000313|EMBL:EEA90401.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ferric uptake regulator, Fur family
L2_039_239G1_scaffold_8_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18551..18982)
DNA (432bp) protein (144aa)
Acylphosphatase {ECO:0000313|EMBL:EEA90402.1}; EC=3.6.1.7 {ECO:0000313|EMBL:EEA90402.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Acylphosphatase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE0_9ACTN
acylphosphatase
L2_039_239G1_scaffold_8_21
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(18993..20150)
DNA (1158bp) protein (386aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE1_9ACTN
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEA90403.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
oxidoreductase domain-containing protein
L2_039_239G1_scaffold_8_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(20196..20684)
DNA (489bp) protein (163aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Ribonuclease H n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE2_9ACTN
hypothetical protein
L2_039_239G1_scaffold_8_23
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

20844..21995
DNA (1152bp) protein (384aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE3_9ACTN
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEA90405.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
dehydrogenase or related protein
L2_039_239G1_scaffold_8_24
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22236..22847
DNA (612bp) protein (204aa)
Pentapeptide repeat protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE4_9ACTN
Pentapeptide repeat protein {ECO:0000313|EMBL:EEA90406.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
pentapeptide repeat-containing protein
L2_039_239G1_scaffold_8_25
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

23417..23740
DNA (324bp) protein (108aa)
Tat pathway signal sequence domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE6_9ACTN
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEA90407.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L2_039_239G1_scaffold_8_26
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24212..24574
DNA (363bp) protein (121aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
apurinic endonuclease Apn1 (EC:3.1.21.2)
Probable endonuclease 4 n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE8_9ACTN
L2_039_239G1_scaffold_8_27
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

24603..25088
DNA (486bp) protein (162aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Endonuclease IV (EC:3.1.21.-)
Probable endonuclease 4 n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBE8_9ACTN
L2_039_239G1_scaffold_8_28
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(25012..26019)
DNA (1008bp) protein (336aa)
Response regulator receiver domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBG2_9ACTN
Response regulator receiver domain protein {ECO:0000313|EMBL:EEA90374.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
two component transcriptional regulator, winged helix family
L2_039_239G1_scaffold_8_29
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(26318..28123)
DNA (1806bp) protein (602aa)
ABC transporter, ATP-binding protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBG3_9ACTN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEA90375.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
ABC transporter
L2_039_239G1_scaffold_8_30
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

28534..29472
DNA (939bp) protein (313aa)
DNA-binding helix-turn-helix protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GBG4_9ACTN
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEA90376.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
Displaying items 1-30 of 214 in total

View Taxonomy