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L2_039_239G1_scaffold_124

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_124_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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310..861
DNA (552bp) protein (184aa)
Integrase, catalytic region n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0I6_BIFBP
integrase, catalytic region
Uncharacterized protein {ECO:0000313|EMBL:ERI84296.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_239G1_scaffold_124_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1049..2176)
DNA (1128bp) protein (376aa)
ABC transporter ATP-binding protein (EC:3.6.3.20)
Cellobiose transport system, ATP-binding protein n=4 Tax=Bifidobacterium bifidum RepID=E3ERG6_BIFBS
Cellobiose transport system, ATP-binding protein {ECO:0000313|EMBL:ADO53970.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_239G1_scaffold_124_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2651..3562)
DNA (912bp) protein (304aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2HB14_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51211.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_239G1_scaffold_124_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4049..6520
DNA (2472bp) protein (824aa)
pkwA; putative serine/threonine-protein kinase (EC:2.7.11.1)
Putative serine/threonine-protein kinase {ECO:0000313|EMBL:AFL05414.1}; EC=2.7.11.1 {ECO:0000313|EMBL:AFL05414.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Putative serine/threonine-protein kinase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WKK1_BIFBI
L2_039_239G1_scaffold_124_5
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6539..7645
DNA (1107bp) protein (369aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GP79_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB23046.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_239G1_scaffold_124_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8263..9804
DNA (1542bp) protein (514aa)
lytic transglycosylase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036141EC
collagen-binding domain
Uncharacterized protein {ECO:0000313|EMBL:ADO53974.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L2_039_239G1_scaffold_124_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


9816..10766
DNA (951bp) protein (317aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Ribosomal RNA small subunit methyltransferase A n=5 Tax=Bifidobacterium RepID=E3ERH1_BIFBS
ksgA; Dimethyladenosine transferase
L2_039_239G1_scaffold_124_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10763..11803
DNA (1041bp) protein (347aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase n=1 Tax=Bifidobacterium bifidum RepID=UPI00036CFC68
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
L2_039_239G1_scaffold_124_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11845..12471
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M625_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF16520.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L2_039_239G1_scaffold_124_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12563..13990)
DNA (1428bp) protein (476aa)
RNA nucleotidyltransferase (EC:2.7.7.72)
tRNA nucleotidyltransferase n=3 Tax=Bifidobacterium RepID=E3ERH4_BIFBS
RNA nucleotidyltransferase {ECO:0000313|EMBL:CDB22874.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_239G1_scaffold_124_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14067..14720
DNA (654bp) protein (218aa)
Phosphohydrolase (Nudix family protein) n=8 Tax=Bifidobacterium RepID=E3ERH5_BIFBS
NTP pyrophosphohydrolase
NTP pyrophosphohydrolase {ECO:0000313|EMBL:AFL05421.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_039_239G1_scaffold_124_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14717..16996
DNA (2280bp) protein (760aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IQY4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51220.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L2_039_239G1_scaffold_124_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16993..21429
DNA (4437bp) protein (1479aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GNN7_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22871.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L2_039_239G1_scaffold_124_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21623..22789
DNA (1167bp) protein (389aa)
Thioredoxin reductase {ECO:0000313|EMBL:KFI42121.1}; EC=1.8.1.9 {ECO:0000313|EMBL:KFI42121.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
trxB; thioredoxin-disulfide reductase (EC:1.8.1.9)
Thioredoxin-disulfide reductase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DWT8_BIFBI
L2_039_239G1_scaffold_124_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23256..24620)
DNA (1365bp) protein (455aa)
chromosome partitioning protein ParB n=1 Tax=Bifidobacterium bifidum RepID=UPI0003005F63
Chromosome partitioning protein ParB {ECO:0000313|EMBL:BAQ99031.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
chromosome partitioning protein
L2_039_239G1_scaffold_124_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24624..25607)
DNA (984bp) protein (328aa)
Chromosome partitioning protein ParA n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GBQ1_9BIFI
Chromosome partitioning protein ParA {ECO:0000313|EMBL:CDB22868.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
parA; chromosome partitioning protein ParA
L2_039_239G1_scaffold_124_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26069..26767)
DNA (699bp) protein (233aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ERI1_BIFBS
gidB; Methyltransferase GidB (glucose inhibited division protein B)
L2_039_239G1_scaffold_124_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26764..27294)
DNA (531bp) protein (177aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2HB25_BIFBI
hypothetical protein
R3H domain protein {ECO:0000313|EMBL:ERI84277.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99034.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_239G1_scaffold_124_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27376..28386)
DNA (1011bp) protein (337aa)
Membrane protein n=5 Tax=Bifidobacterium RepID=I3WKL6_BIFBI
oxaA; membrane protein
Membrane protein insertase, YidC/Oxa1 family {ECO:0000313|EMBL:ERI84276.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ99035.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L2_039_239G1_scaffold_124_20
unknown

Not on your lists

28716..29132
DNA (417bp) protein (139aa)

This feature has no annotations

L2_039_239G1_scaffold_124_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(29089..29223)
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=8 Tax=Bifidobacterium RepID=E3ERI4_BIFBS
rpmH; 50S ribosomal protein L34
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_239G1_scaffold_124_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29576..31165
DNA (1590bp) protein (530aa)
Chromosomal replication initiator protein DnaA n=2 Tax=Bifidobacterium bifidum RepID=E4NXQ0_BIFBP
dnaA; Chromosomal replication initiator protein DnaA
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L2_039_239G1_scaffold_124_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31765..32889
DNA (1125bp) protein (375aa)
dnaN; DnaN DNA polymerase III, beta chain (EC:2.7.7.7)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
DNA polymerase III subunit beta n=7 Tax=Bifidobacterium RepID=E3ENC8_BIFBS
L2_039_239G1_scaffold_124_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32977..34290
DNA (1314bp) protein (438aa)
DNA replication and repair protein RecF n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFD8_BIFBI
recF; DNA replication and repair protein
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L2_039_239G1_scaffold_124_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34287..34859
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C1E2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI42132.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L2_039_239G1_scaffold_124_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35060..37171
DNA (2112bp) protein (704aa)
gyrB; gyrB DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
DNA gyrase subunit B n=8 Tax=Bifidobacterium RepID=E3END1_BIFBS
L2_039_239G1_scaffold_124_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


37304..40036
DNA (2733bp) protein (911aa)
gyrA; GyrA DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
DNA gyrase subunit A n=4 Tax=Bifidobacterium bifidum RepID=E4NXQ5_BIFBP
L2_039_239G1_scaffold_124_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40096..40653
DNA (558bp) protein (186aa)
Uncharacterized protein n=3 Tax=Bifidobacterium RepID=I3WFE2_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22857.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L2_039_239G1_scaffold_124_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(41016..41492)
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VCC4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51239.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
alpha-L-arabinofuranosidase
L2_039_239G1_scaffold_124_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42249..43163)
DNA (915bp) protein (305aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2I8J3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52214.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 72 in total

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