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L2_039_239G1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_296_1
Collinsella aerofaciens, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(202..1263)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EBY4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EBA38877.1}; TaxID=411903 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella aerofaciens ATCC 25986.;"
glucosamine-fructose-6-phosphate aminotransferase
L2_039_239G1_scaffold_296_2
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(1698..2507)
DNA (810bp) protein (270aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9G0_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EEP44648.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
GntR family transcriptional regulator
L2_039_239G1_scaffold_296_3
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(2492..3262)
DNA (771bp) protein (257aa)
UbiC transcription regulator-associated domain protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9G1_9ACTN
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EEP44649.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
GntR family transcriptional regulator
L2_039_239G1_scaffold_296_4
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(3380..4051)
DNA (672bp) protein (224aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9G2_9ACTN
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EEP44650.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
HAD-superfamily hydrolase
L2_039_239G1_scaffold_296_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4196..5293)
DNA (1098bp) protein (366aa)
SIS domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8D0_9FIRM
SIS domain protein {ECO:0000313|EMBL:EEC91014.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
sugar isomerase (SIS)
L2_039_239G1_scaffold_296_6
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5406..6260)
DNA (855bp) protein (285aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Coprobacillus sp. CAG:235 RepID=R5Q8A2_9FIRM
PTS system, mannose/fructose/sorbose family, IID component {ECO:0000313|EMBL:EEF95022.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
PTS system mannose-specific transporter subunitIID
L2_039_239G1_scaffold_296_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6241..7029)
DNA (789bp) protein (263aa)
PTS system sorbose-specific iic component n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C8D3_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EEC91017.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
PTS system mannose-specific transporter subunit IIC
L2_039_239G1_scaffold_296_8
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7256..7723)
DNA (468bp) protein (156aa)
PTS system sorbose subfamily IIB component n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NP37_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EEF95024.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
PTS system mannose-specific transporter subunit IIB
L2_039_239G1_scaffold_296_9
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7828..8247)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:308 RepID=R7AXU0_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:ERK47327.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
PTS system, IIA component
L2_039_239G1_scaffold_296_10
Olsenella uli, Olsenella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(8410..9168)
DNA (759bp) protein (253aa)
Transcriptional regulator, GntR family n=1 Tax=Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / VPI D76D-27C) RepID=E1QZC3_OLSUV
GntR family transcriptional regulator
UbiC transcription regulator-associated domain protein {ECO:0000313|EMBL:EUB30401.1}; TaxID=1190621 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Olsenella.;" source="Olsenella uli MSTE5.;"
L2_039_239G1_scaffold_296_11
Collinsella intestinalis, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(9435..10271)
DNA (837bp) protein (279aa)
Cof-like hydrolase n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F9G3_9ACTN
Cof-like hydrolase {ECO:0000313|EMBL:EEP44651.1}; TaxID=521003 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella intestinalis DSM 13280.;"
HAD phosphatase superfamily protein
L2_039_239G1_scaffold_296_12
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(10532..12223)
DNA (1692bp) protein (564aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T5_9ACTN
L2_039_239G1_scaffold_296_13
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(12504..13361)
DNA (858bp) protein (286aa)
EDD domain protein, DegV family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T4_9ACTN
EDD domain protein, DegV family {ECO:0000313|EMBL:EEA90954.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
degV family protein
L2_039_239G1_scaffold_296_14
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(13458..14324)
DNA (867bp) protein (289aa)
EDD domain protein, DegV family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T3_9ACTN
EDD domain protein, DegV family {ECO:0000313|EMBL:EEA90953.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
degV family protein
L2_039_239G1_scaffold_296_15
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(14564..15250)
DNA (687bp) protein (229aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T2_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90952.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L2_039_239G1_scaffold_296_16
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(15629..17875)
DNA (2247bp) protein (749aa)
DEAD/DEAH box helicase (Fragment) n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9T0_9ACTN
DEAD/DEAH box helicase {ECO:0000313|EMBL:EEA90977.1}; Flags: Fragment;; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
DEAD/DEAH box helicase domain protein
L2_039_239G1_scaffold_296_17
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

18346..20664
DNA (2319bp) protein (773aa)
Copper-exporting ATPase {ECO:0000313|EMBL:EEA90975.1}; EC=3.6.3.4 {ECO:0000313|EMBL:EEA90975.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
Copper-exporting ATPase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9S8_9ACTN
heavy metal translocating P-type ATPase
L2_039_239G1_scaffold_296_18
unknown

Not on your lists

comp(20547..21533)
DNA (987bp) protein (329aa)

This feature has no annotations

L2_039_239G1_scaffold_296_19
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21685..21906
DNA (222bp) protein (74aa)
Heavy metal-associated domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9S5_9ACTN
Heavy metal-associated domain protein {ECO:0000313|EMBL:EEA90972.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
heavy metal transport/detoxification protein
L2_039_239G1_scaffold_296_20
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

21913..22185
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9S4_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90971.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_296_21
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

22284..22766
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9S3_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90970.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_296_22
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(23633..24964)
DNA (1332bp) protein (444aa)
Amidohydrolase family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9S1_9ACTN
Amidohydrolase family protein {ECO:0000313|EMBL:EEA90968.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
amidohydrolase
L2_039_239G1_scaffold_296_23
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

25534..27138
DNA (1605bp) protein (535aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9R9_9ACTN
L2_039_239G1_scaffold_296_24
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(27235..28806)
DNA (1572bp) protein (524aa)
Transporter, lactate permease (LctP) family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9R8_9ACTN
Transporter, lactate permease (LctP) family {ECO:0000313|EMBL:EEA90965.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
L-lactate transport
L2_039_239G1_scaffold_296_25
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

29098..30606
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9R6_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EEA90979.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
polysaccharide biosynthesis protein
L2_039_239G1_scaffold_296_26
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(30690..31559)
DNA (870bp) protein (290aa)
Ser/Thr phosphatase family protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9P2_9ACTN
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EEA91009.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
metallophosphoesterase
L2_039_239G1_scaffold_296_27
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

31738..32847
DNA (1110bp) protein (370aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
phosphoserine transaminase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9P1_9ACTN
L2_039_239G1_scaffold_296_28
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

33167..34330
DNA (1164bp) protein (388aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EEA91007.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EEA91007.1};; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
4-phosphoerythronate dehydrogenase n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9P0_9ACTN
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
L2_039_239G1_scaffold_296_29
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

comp(34370..35146)
DNA (777bp) protein (259aa)
Transcriptional regulator, TetR family n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9N9_9ACTN
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA91006.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
L2_039_239G1_scaffold_296_30
Collinsella stercoris, Collinsella, Coriobacteriales, Coriobacteriia, Actinobacteria, Bacteria

Not on your lists

35413..36828
DNA (1416bp) protein (472aa)
Radical SAM domain protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6G9N8_9ACTN
Radical SAM domain protein {ECO:0000313|EMBL:EEA91005.1}; TaxID=445975 species="Bacteria; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella.;" source="Collinsella stercoris DSM 13279.;"
hypothetical protein
Displaying items 1-30 of 39 in total

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