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L2_039_239G1_scaffold_350

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_350_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..462
DNA (462bp) protein (154aa)
Predicted protein (Fragment) n=1 Tax=Escherichia coli B354 RepID=D6JDJ4_ECOLX
hypothetical protein
PF11924 family protein {ECO:0000313|EMBL:EIH22789.1}; TaxID=869675 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2264.;"
L2_039_239G1_scaffold_350_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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533..4180
DNA (3648bp) protein (1216aa)
Adhesin n=1 Tax=Escherichia coli KTE66 RepID=L3P633_ECOLX
Adhesin {ECO:0000313|EMBL:ELE42890.1}; TaxID=1182673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE66.;"
adherence and invasion outermembrane protein (Inv,enhances Peyer's patches colonization)
L2_039_239G1_scaffold_350_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4442..5494)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4IUG8_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:EQX88077.1}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
ADP-heptose--LPS heptosyltransferase-like protein
L2_039_239G1_scaffold_350_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5809..7125
DNA (1317bp) protein (439aa)
Shikimate transport protein n=272 Tax=Escherichia RepID=D2NJQ6_ECOS5
shiA; shikimate transporter
Shikimate transporter {ECO:0000313|EMBL:ELE42892.1}; TaxID=1182673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE66.;"
L2_039_239G1_scaffold_350_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7227..8681
DNA (1455bp) protein (485aa)
amn; AMP nucleosidase (EC:3.2.2.4)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=868133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1A.;"
AMP nucleosidase n=3 Tax=Escherichia coli RepID=L3F8N3_ECOLX
L2_039_239G1_scaffold_350_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9023..9739
DNA (717bp) protein (239aa)
Probable transcriptional regulatory protein YeeN n=793 Tax=Enterobacteriaceae RepID=YEEN_ECOL5
yeeN; hypothetical protein
Probable transcriptional regulatory protein YeeN {ECO:0000256|HAMAP-Rule:MF_00918}; TaxID=1116133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP021552.8.;"
L2_039_239G1_scaffold_350_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(10369..11823)
DNA (1455bp) protein (485aa)
MATE efflux family protein n=3 Tax=Escherichia coli RepID=L4JLB7_ECOLX
Putative transporter {ECO:0000313|EMBL:EGP24670.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
hypothetical protein
L2_039_239G1_scaffold_350_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12130..13080)
DNA (951bp) protein (317aa)
Cys regulon transcriptional regulator Cbl n=13 Tax=Escherichia coli RepID=F4UB76_ECOLX
HTH-type transcriptional regulator cbl {ECO:0000313|EMBL:EGP24672.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
LysR family transcriptional regulator
L2_039_239G1_scaffold_350_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13182..14099)
DNA (918bp) protein (306aa)
Nitrogen assimilation regulatory protein nac n=12 Tax=Escherichia coli RepID=H1C1H4_ECOLX
Nitrogen assimilation regulatory protein nac {ECO:0000313|EMBL:EZK22021.1}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C2.;"
nac; nitrogen assimilation regulatory protein
L2_039_239G1_scaffold_350_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14416..15048)
DNA (633bp) protein (211aa)
3-hexulose-6-phosphate isomerase {ECO:0000313|EMBL:EZJ71097.1}; EC=5.3.1.27 {ECO:0000313|EMBL:EZJ71097.1};; TaxID=1444191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-182-04_S3_C3.;"
SIS domain protein n=1 Tax=Escherichia coli STEC_MHI813 RepID=G2C626_ECOLX
sugar isomerase (SIS)
L2_039_239G1_scaffold_350_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15064..15816)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Escherichia coli BIDMC 39 RepID=V2Z4R8_ECOLX
short-chain dehydrogenase/reductase SDR
Short chain dehydrogenase family protein {ECO:0000313|EMBL:EZJ71096.1}; TaxID=1444191 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-182-04_S3_C3.;"
L2_039_239G1_scaffold_350_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15912..16556)
DNA (645bp) protein (215aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
Ribulose-phosphate 3-epimerase n=16 Tax=Escherichia coli RepID=E2QNK2_ECOLX
ribulose-phosphate 3-epimerase (EC 5131)
L2_039_239G1_scaffold_350_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16579..17832)
DNA (1254bp) protein (418aa)
PTS system Galactitol-specific IIC component n=16 Tax=Escherichia coli RepID=B1IZR9_ECOLC
PTS system galactitol-specific transporter subunit IIC
PTS system sugar-specific permease component family protein {ECO:0000313|EMBL:EZK05740.1}; TaxID=1444134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-182-04_S3_C1.;"
L2_039_239G1_scaffold_350_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17853..18146)
DNA (294bp) protein (98aa)
ATC8739 n=36 Tax=Escherichia coli RepID=E4UEF7_ECOLX
hypothetical protein
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:ESD41469.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L2_039_239G1_scaffold_350_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18165..18608)
DNA (444bp) protein (148aa)
PTS system, galactitol-specific IIA component n=4 Tax=Escherichia coli RepID=F4TU40_ECOLX
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein {ECO:0000313|EMBL:KDY16720.1}; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-316-03_S4_C2.;"
putative PTS IIA-like nitrogen-regulatory protein PtsN
L2_039_239G1_scaffold_350_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18948..19703)
DNA (756bp) protein (252aa)
Transcriptional regulator, DeoR family n=1 Tax=Escherichia coli 3006 RepID=K3IPY7_ECOLX
DeoR family transcriptional regulator
DeoR-like helix-turn-helix domain protein {ECO:0000313|EMBL:KDY16719.1}; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-316-03_S4_C2.;"
L2_039_239G1_scaffold_350_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20052..20588
DNA (537bp) protein (179aa)
Ribose-5-phosphate isomerase B domain protein {ECO:0000313|EMBL:EMX03760.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EMX03760.1};; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 174750.;"
Sugar-phosphate isomerase, RpiB/LacA/LacB family n=30 Tax=Escherichia coli RepID=B1IZR5_ECOLC
RpiB/LacA/LacB family sugar-phosphate isomerase
L2_039_239G1_scaffold_350_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20592..21962
DNA (1371bp) protein (457aa)
PTS system, galactitol-specific IIC component n=45 Tax=Escherichia coli RepID=E2QNK6_ECOLX
PTS system, galactitol-specific IIC component
PTS system sugar-specific permease component family protein {ECO:0000313|EMBL:EZK05735.1}; TaxID=1444134 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-182-04_S3_C1.;"
L2_039_239G1_scaffold_350_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21986..22270
DNA (285bp) protein (95aa)
ATC8739 n=52 Tax=Enterobacteriaceae RepID=E4UEF9_ECOLX
hypothetical protein
PTS system, Lactose/Cellobiose specific IIB subunit {ECO:0000313|EMBL:EMX03762.1}; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 174750.;"
L2_039_239G1_scaffold_350_20
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22281..22739
DNA (459bp) protein (153aa)
PTS system protein, galactitol-specific IIA component {ECO:0000313|EMBL:EFW52927.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFW52927.1};; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 family protein n=1 Tax=Escherichia coli STEC_MHI813 RepID=G2C635_ECOLX
Galactitol-specific enzyme IIA of phosphotransferase system
L2_039_239G1_scaffold_350_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22791..23756)
DNA (966bp) protein (322aa)
Transcriptional regulator n=28 Tax=Escherichia coli RepID=E2QNK8_ECOLX
transcriptional regulator
Sugar-binding domain protein {ECO:0000313|EMBL:ESD41476.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L2_039_239G1_scaffold_350_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23930..24856)
DNA (927bp) protein (309aa)
L,D-transpeptidase linking Lpp to murein n=4 Tax=Escherichia coli RepID=L5IN81_ECOLX
Putative L,D-transpeptidase ErfK/SrfK {ECO:0000313|EMBL:EMX03765.1}; TaxID=1125634 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 174750.;"
hypothetical protein
L2_039_239G1_scaffold_350_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24918..25997)
DNA (1080bp) protein (360aa)
cobT; Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21)
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1116125 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2845650.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=1 Tax=Escherichia coli O103:H25 str. CVM9340 RepID=I4P1T3_ECOLX
L2_039_239G1_scaffold_350_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26009..26752)
DNA (744bp) protein (248aa)
Adenosylcobinamide-GDP ribazoletransferase {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154501}; EC=2.7.8.26 {ECO:0000256|HAMAP-Rule:MF_00719, ECO:0000256|SAAS:SAAS00154502};; Cobalamin synthase {ECO:0000256|HAMAP-Rule:MF_00719}; Cobalamin-5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00719}; TaxID=550677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B354.;"
Cobalamin synthase n=63 Tax=Escherichia coli RepID=COBS_ECOLU
cobS; cobalamin synthase
L2_039_239G1_scaffold_350_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26749..27291)
DNA (543bp) protein (181aa)
cobU; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase (EC:2.7.7.62)
Adenosylcobinamide kinase {ECO:0000313|EMBL:KHG99708.1}; EC=2.7.1.156 {ECO:0000313|EMBL:KHG99708.1};; EC=2.7.7.62 {ECO:0000313|EMBL:KHG99708.1};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Cobinamide kinase/cobinamide phosphate guanylyltransferase n=14 Tax=Enterobacteriaceae RepID=Q3Z0K2_SHISS
L2_039_239G1_scaffold_350_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28163..28492)
DNA (330bp) protein (110aa)
Putative alpha helix protein n=1 Tax=Shigella boydii serotype 4 (strain Sb227) RepID=Q323K5_SHIBS
hypothetical protein
UPF0265 protein YeeX {ECO:0000256|HAMAP-Rule:MF_00683}; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE70.;"
L2_039_239G1_scaffold_350_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28664..29722)
DNA (1059bp) protein (353aa)
Inner membrane protein YeeA n=305 Tax=Enterobacteriaceae RepID=YEEA_ECOLI
yeeA; hypothetical protein
Inner membrane protein yeeA {ECO:0000313|EMBL:EQX88111.1}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
L2_039_239G1_scaffold_350_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29920..30393)
DNA (474bp) protein (158aa)
DNA gyrase inhibitor n=404 Tax=Enterobacteriaceae RepID=C3SD80_ECOLX
sbmC; DNA gyrase inhibitor SbmC
DNA gyrase inhibitor {ECO:0000256|HAMAP-Rule:MF_01896}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
L2_039_239G1_scaffold_350_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30512..31678)
DNA (1167bp) protein (389aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase DacD {ECO:0000313|EMBL:EII37449.1}; EC=3.4.16.4 {ECO:0000313|EMBL:EII37449.1};; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
D-alanyl-D-alanine carboxypeptidase dacD n=2 Tax=Escherichia coli RepID=L4E8E5_ECOLX
L2_039_239G1_scaffold_350_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31887..33314
DNA (1428bp) protein (476aa)
sbcB; exonuclease I (EC:3.1.11.1)
Exodeoxyribonuclease I {ECO:0000256|PIRNR:PIRNR000977}; EC=3.1.11.1 {ECO:0000256|PIRNR:PIRNR000977};; TaxID=741093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli Xuzhou21.;"
Exodeoxyribonuclease I n=137 Tax=Escherichia coli RepID=B7A3Z4_ECO57
Displaying items 1-30 of 55 in total

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