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L2_039_239G1_scaffold_498

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_498_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..140
DNA (138bp) protein (46aa)
Rubrerythrin n=2 Tax=Clostridium RepID=B6FK22_9CLOT
Rubrerythrin {ECO:0000313|EMBL:EEA83634.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Rubrerythrin
L2_039_239G1_scaffold_498_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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332..1768
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
adenylosuccinate lyase (EC:4.3.2.2)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QNN6_9CLOT
L2_039_239G1_scaffold_498_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1783..3060
DNA (1278bp) protein (426aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
purA; adenylosuccinate synthetase PurA (EC:6.3.4.4)
Adenylosuccinate synthetase n=2 Tax=Clostridium RepID=B6FK20_9CLOT
L2_039_239G1_scaffold_498_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3172..4158
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS42_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23539.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe-S oxidoreductase
L2_039_239G1_scaffold_498_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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4199..4567
DNA (369bp) protein (123aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK19_9CLOT
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EEA83631.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Fe-S oxidoreductase
L2_039_239G1_scaffold_498_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4756..5814
DNA (1059bp) protein (353aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FK18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23540.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_498_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5841..8018)
DNA (2178bp) protein (726aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23541.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L2_039_239G1_scaffold_498_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8023..10548)
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QNP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23542.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L2_039_239G1_scaffold_498_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10745..11338
DNA (594bp) protein (198aa)
Transcriptional regulator, TetR family n=2 Tax=Clostridium RepID=B6FK15_9CLOT
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EEA83627.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, TetR family
L2_039_239G1_scaffold_498_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

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11540..12376
DNA (837bp) protein (279aa)
Transcription antiterminator LicT n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK14_9CLOT
Transcription antiterminator LicT {ECO:0000313|EMBL:EEA83626.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
bglg family transcriptional antiterminator
L2_039_239G1_scaffold_498_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12447..14405
DNA (1959bp) protein (653aa)
PTS system, beta-glucoside-specific, IIABC component {ECO:0000313|EMBL:EEA83625.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EEA83625.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
PTS system, beta-glucoside-specific, IIABC component n=2 Tax=Clostridium RepID=B6FK13_9CLOT
PTS system beta-glucoside-specific IIA component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIB component, Glc family (TC 4.A.1.2.5)/PTS system beta-glucoside-specific IIC component, Glc family (TC 4.A.1.2.5)
L2_039_239G1_scaffold_498_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14428..15879
DNA (1452bp) protein (484aa)
Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosid ase (EC:3.2.1.21)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYN7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23546.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_498_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16271..17647
DNA (1377bp) protein (459aa)
Tryptophan synthase {ECO:0000256|SAAS:SAAS00015859}; EC=4.2.1.20 {ECO:0000256|SAAS:SAAS00015859};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
tryptophan synthase subunit beta (EC:4.2.1.20)
Pyridoxal-phosphate dependent TrpB-like enzyme n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK10_9CLOT
L2_039_239G1_scaffold_498_14
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17711..18376
DNA (666bp) protein (222aa)
Regulatory protein VanR n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5R5_9FIRM
Regulatory protein VanR {ECO:0000313|EMBL:EFW06566.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
hypothetical protein
L2_039_239G1_scaffold_498_15
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18466..19380
DNA (915bp) protein (305aa)
ABC transporter, ATP-binding protein n=4 Tax=Lachnospiraceae RepID=A5KKY9_9FIRM
Bacitracin transport ATP-binding protein BcrA {ECO:0000313|EMBL:EFV19568.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
hypothetical protein
L2_039_239G1_scaffold_498_16
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19373..20197
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:317 RepID=R6W6V9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD06838.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hypothetical protein
L2_039_239G1_scaffold_498_17
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20215..21126
DNA (912bp) protein (304aa)
Putative sensor histidine kinase n=1 Tax=Clostridium sp. D5 RepID=F0Z3K7_9CLOT
Putative sensor histidine kinase {ECO:0000313|EMBL:EGB91271.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
histidine kinase
L2_039_239G1_scaffold_498_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21254..22567
DNA (1314bp) protein (438aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PYN9_9CLOT
Putative permease {ECO:0000313|EMBL:EEA83618.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
uracil-xanthine permease
L2_039_239G1_scaffold_498_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22704..24731
DNA (2028bp) protein (676aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK05_9CLOT
L2_039_239G1_scaffold_498_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24752..25732
DNA (981bp) protein (327aa)
Lysophospholipase (EC:3.1.1.5)
Hydrolase, alpha/beta domain protein n=2 Tax=Clostridium RepID=B6FK04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23553.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_498_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25752..26801
DNA (1050bp) protein (350aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS53_9CLOT
L2_039_239G1_scaffold_498_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26908..28134
DNA (1227bp) protein (409aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK01_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:EEA83695.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hydrogenase large subunit domain-containing protein
L2_039_239G1_scaffold_498_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28220..29389
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23556.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
FliB family protein
L2_039_239G1_scaffold_498_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29401..30615
DNA (1215bp) protein (405aa)
Exonuclease SbcCD, D subunit n=2 Tax=Clostridium RepID=B6FJZ9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23557.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
sbcD; exonuclease SbcD
L2_039_239G1_scaffold_498_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30602..33682
DNA (3081bp) protein (1027aa)
Exodeoxyribonuclease I subunit C (EC:3.1.11.1)
Exonuclease SbcCD, C subunit n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJZ8_9CLOT
Exonuclease SbcCD, C subunit {ECO:0000313|EMBL:EEA83692.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_039_239G1_scaffold_498_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33758..36442
DNA (2685bp) protein (895aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PS58_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23559.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Displaying 26 items

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