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L2_039_239G1_scaffold_556

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_556_1
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..80)
DNA (78bp) protein (26aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCW1_9FIRM
dTDP-glucose pyrophosphorylase
Uncharacterized protein {ECO:0000313|EMBL:EGG81321.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
L2_039_239G1_scaffold_556_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

259..1113
DNA (855bp) protein (285aa)
Transcriptional regulator, AraC family n=2 Tax=Clostridium RepID=B6FPJ0_9CLOT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEA82054.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
AraC family transcriptional regulator
L2_039_239G1_scaffold_556_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1138..1305)
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPJ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82055.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_039_239G1_scaffold_556_4
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1318..2184)
DNA (867bp) protein (289aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FPJ2_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82056.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sugar ABC transporter permease
L2_039_239G1_scaffold_556_5
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2203..3093)
DNA (891bp) protein (297aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=B6FPJ3_9CLOT
ABC transporter, permease protein {ECO:0000313|EMBL:EEA82057.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC transporter
L2_039_239G1_scaffold_556_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3181..4548)
DNA (1368bp) protein (456aa)
Carbohydrate ABC transporter, carbohydrate-binding protein n=2 Tax=Clostridium RepID=B6FPJ4_9CLOT
Carbohydrate ABC transporter, carbohydrate-binding protein {ECO:0000313|EMBL:EEA82058.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ABC-type sugar transport system, periplasmic component
L2_039_239G1_scaffold_556_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4792..6954)
DNA (2163bp) protein (721aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=2 Tax=Clostridium RepID=B6FPK1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23783.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_556_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7215..8135
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QPA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23782.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
AraC family transcriptional regulator
L2_039_239G1_scaffold_556_9
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8197..8775
DNA (579bp) protein (193aa)
Chromate transport protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPK5_9CLOT
Chromate transport protein {ECO:0000313|EMBL:EEA81964.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Chromate transport protein ChrA
L2_039_239G1_scaffold_556_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8772..9335
DNA (564bp) protein (188aa)
Chromate transport protein n=2 Tax=Clostridium RepID=B6FPK6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23778.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Chromate transport protein ChrA
L2_039_239G1_scaffold_556_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(9390..9653)
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=2 Tax=Clostridium RepID=B6FPK7_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S18P
L2_039_239G1_scaffold_556_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9719..10156)
DNA (438bp) protein (146aa)
Single-stranded DNA-binding protein n=2 Tax=Clostridium RepID=B6FPK8_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
single-strand binding protein
L2_039_239G1_scaffold_556_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10175..10462)
DNA (288bp) protein (96aa)
30S ribosomal protein S6 n=2 Tax=Clostridium RepID=B6FPK9_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
SSU ribosomal protein S6P
L2_039_239G1_scaffold_556_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10575..10763)
DNA (189bp) protein (63aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPL0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81969.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_039_239G1_scaffold_556_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10777..11580)
DNA (804bp) protein (268aa)
Sortase, SrtB family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPL1_9CLOT
Sortase, SrtB family {ECO:0000313|EMBL:EEA81970.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sortase, SrtB family
L2_039_239G1_scaffold_556_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11653..12945)
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=2 Tax=Clostridium RepID=B6FPL2_9CLOT
L2_039_239G1_scaffold_556_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13101..13598)
DNA (498bp) protein (166aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPL3_9CLOT
L2_039_239G1_scaffold_556_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13625..14041)
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PJP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23770.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_556_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14105..14512)
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PSM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23769.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
TM2 domain-containing protein
L2_039_239G1_scaffold_556_20
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14533..14652)
DNA (120bp) protein (40aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PHD5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23768.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_556_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14739..15020)
DNA (282bp) protein (94aa)
ATP synthase F1 subcomplex epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=2 Tax=Clostridium RepID=B6FPL7_9CLOT
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L2_039_239G1_scaffold_556_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15033..16424)
DNA (1392bp) protein (464aa)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP synthase subunit beta n=2 Tax=Clostridium RepID=B6FPL8_9CLOT
ATP synthase F1 subunit beta
L2_039_239G1_scaffold_556_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16437..17294)
DNA (858bp) protein (286aa)
ATP synthase gamma chain n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJN9_9CLOT
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
F0F1 ATP synthase subunit gamma
L2_039_239G1_scaffold_556_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17313..18824)
DNA (1512bp) protein (504aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP synthase F1 subcomplex alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha n=2 Tax=Clostridium RepID=B6FPM0_9CLOT
L2_039_239G1_scaffold_556_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18850..19395)
DNA (546bp) protein (182aa)
ATP synthase F1 subcomplex delta subunit (EC:3.6.3.14)
ATP synthase subunit delta n=2 Tax=Clostridium RepID=B6FPM1_9CLOT
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_556_26
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19383..19898)
DNA (516bp) protein (172aa)
ATP synthase F0 subcomplex B subunit (EC:3.6.3.14)
ATP synthase subunit b n=2 Tax=Clostridium RepID=B6FPM2_9CLOT
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_556_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19939..20205)
DNA (267bp) protein (89aa)
ATP synthase F0, C subunit {ECO:0000313|EMBL:EEA81982.1}; EC=3.6.3.14 {ECO:0000313|EMBL:EEA81982.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0, C subunit n=2 Tax=Clostridium RepID=B6FPM3_9CLOT
L2_039_239G1_scaffold_556_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20249..20962)
DNA (714bp) protein (238aa)
ATP synthase subunit a n=2 Tax=Clostridium RepID=B6FPM4_9CLOT
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
ATP synthase
L2_039_239G1_scaffold_556_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20977..21366)
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FPM5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23759.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_556_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21353..21601)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FPM6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81985.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Putative F0F1-ATPase subunit (ATPase_gene1).
Displaying items 1-30 of 37 in total

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