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L2_039_239G1_scaffold_638

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_638_1
unknown

Not on your lists

comp(12..104)
DNA (93bp) protein (31aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R380_BIFLM
hypothetical protein
L2_039_239G1_scaffold_638_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(296..505)
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R382_BIFLM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY21244.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_039_239G1_scaffold_638_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(561..1259)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4R383_BIFLM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY21243.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L2_039_239G1_scaffold_638_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1229..1738)
DNA (510bp) protein (170aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=Q8G4W0_BIFLO
Uncharacterized protein {ECO:0000313|EMBL:KFI67765.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L2_039_239G1_scaffold_638_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1975..2127
DNA (153bp) protein (51aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3AXJ7_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ29310.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L2_039_239G1_scaffold_638_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2294..2986)
DNA (693bp) protein (231aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031, ECO:0000313|EMBL:CBK70173.1};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
3-isopropylmalate dehydratase small subunit n=16 Tax=Bifidobacterium RepID=LEUD_BIFLD
isopropylmalate isomerase small subunit
L2_039_239G1_scaffold_638_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3069..4472)
DNA (1404bp) protein (468aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
3-isopropylmalate dehydratase large subunit n=14 Tax=Bifidobacterium RepID=LEUC_BIFLD
isopropylmalate isomerase large subunit
L2_039_239G1_scaffold_638_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4766..5566
DNA (801bp) protein (267aa)
IclR-type transcriptional regulator n=3 Tax=Bifidobacterium longum RepID=B3DPI1_BIFLD
transcriptional regulator
IclR family transcriptional regulator {ECO:0000313|EMBL:KEY32235.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L2_039_239G1_scaffold_638_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5739..7022)
DNA (1284bp) protein (428aa)
ser/threonine protein phosphatase n=1 Tax=Bifidobacterium breve RepID=UPI00030B9A41
Ser/Thr protein phosphatase family protein {ECO:0000313|EMBL:KFI67760.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Phosphoesterase
L2_039_239G1_scaffold_638_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7526..9763
DNA (2238bp) protein (746aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
polyphosphate kinase (EC:2.7.4.1)
Polyphosphate kinase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNN0_BIFLS
L2_039_239G1_scaffold_638_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9920..11119
DNA (1200bp) protein (400aa)
NUDIX hydrolase {ECO:0000313|EMBL:KFI67758.1}; EC=3.6.1.55 {ECO:0000313|EMBL:KFI67758.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Probable MutT1 protein n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G4W6_BIFLO
mutT1; MutT1 protein
L2_039_239G1_scaffold_638_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11256..11930
DNA (675bp) protein (225aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GNN2_BIFLS
Uncharacterized protein {ECO:0000313|EMBL:KFI67757.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L2_039_239G1_scaffold_638_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12393..14417)
DNA (2025bp) protein (675aa)
Amylo-alpha-1,6-glucosidase n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C8E1_BIFBA
Hypothetical protein (possible glycogen debranching enzyme)
Amylo-alpha-1,6-glucosidase {ECO:0000313|EMBL:AEF27642.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_039_239G1_scaffold_638_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14469..15353)
DNA (885bp) protein (295aa)
Sugar ABC transporter, permease protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0Z4_BIFBR
Glucose transport system permease protein
Glucose transport system permease protein {ECO:0000313|EMBL:AHJ21971.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_638_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15355..16584)
DNA (1230bp) protein (410aa)
ABC transporter, permease protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQA0_BIFBR
ABC transporter, permease protein {ECO:0000313|EMBL:EFE88395.1}; Sugar ABC transporter permease component {ECO:0000313|EMBL:BAR00819.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Transporter
L2_039_239G1_scaffold_638_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16707..17933)
DNA (1227bp) protein (409aa)
Putative ABC transporter, periplasmic solute-binding protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L0Z6_BIFBR
Solute-binding protein of ABC transporter system for sugars
Solute-binding protein of ABC transporter system for sugars {ECO:0000313|EMBL:AHJ21973.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_638_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18268..19290
DNA (1023bp) protein (341aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium breve RepID=D4BQ98_BIFBR
Transcriptional regulator, lacI type
Transcriptional regulator, lacI type {ECO:0000313|EMBL:AHJ21974.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_638_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19702..20337
DNA (636bp) protein (212aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Uracil phosphoribosyltransferase n=4 Tax=Bifidobacterium breve RepID=F9XZ62_BIFBU
Uracil phosphoribosyltransferase
L2_039_239G1_scaffold_638_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20573..21052
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Ribosomal RNA large subunit methyltransferase H n=4 Tax=Bifidobacterium breve RepID=F6C8E4_BIFBA
Hypothetical protein
L2_039_239G1_scaffold_638_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21095..22204)
DNA (1110bp) protein (370aa)
Glycerophosphodiester phosphodiesterase family protein n=2 Tax=Bifidobacterium breve RepID=H3L100_BIFBR
Glycerophosphoryl diester phosphodiesterase
Uncharacterized protein {ECO:0000313|EMBL:EPD76121.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_039_239G1_scaffold_638_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22230..23327)
DNA (1098bp) protein (366aa)
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A1Q2_BIFBR
Putative tRNA synthase {ECO:0000313|EMBL:BAR00825.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Glutamyl-tRNA synthetase
L2_039_239G1_scaffold_638_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23570..23683)
DNA (114bp) protein (38aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZH86_BIFBR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76123.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_039_239G1_scaffold_638_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23795..26464)
DNA (2670bp) protein (890aa)
Negative regulator of genetic competence ClpC/MecB n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L102_BIFBR
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
clpB; ClpB protein
L2_039_239G1_scaffold_638_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26887..27816
DNA (930bp) protein (310aa)
Transporter, auxin efflux carrier (AEC) family protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BQ92_BIFBR
Transport protein {ECO:0000313|EMBL:BAR00827.1}; Transporter, auxin efflux carrier (AEC) family protein {ECO:0000313|EMBL:EFE88387.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Permease
L2_039_239G1_scaffold_638_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27833..28654)
DNA (822bp) protein (274aa)
FAH family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E3Z4_BIFBR
Fumarylacetoacetate hydrolase family protein
FAH family protein {ECO:0000313|EMBL:ERI87086.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_638_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28744..29469)
DNA (726bp) protein (242aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=F6C8F1_BIFBA
putative membrane spanning protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ABE96449.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L2_039_239G1_scaffold_638_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29643..30557
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Bifidobacterium breve RepID=UPI00036DB47A
putative secreted protein
Putative secreted protein {ECO:0000313|EMBL:AHJ20118.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L2_039_239G1_scaffold_638_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30665..31783)
DNA (1119bp) protein (373aa)
gif; UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase {ECO:0000313|EMBL:ABE96451.1}; EC=5.4.99.9 {ECO:0000313|EMBL:ABE96451.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
UDP-galactopyranose mutase n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L107_BIFBR
L2_039_239G1_scaffold_638_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32588..33637
DNA (1050bp) protein (350aa)
Glycosyltransferase involved in cell wall biogenesis (EC:2.4.-.-)
Glycosyltransferase involved in cell wall biogenesis {ECO:0000313|EMBL:ABE96452.1}; EC=2.4.-.- {ECO:0000313|EMBL:ABE96452.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Glycosyltransferase involved in cell wall biogenesis n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZ72_BIFBU
L2_039_239G1_scaffold_638_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33668..35014)
DNA (1347bp) protein (449aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3A1S4_BIFBR
putative membrane spanning protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76142.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Displaying items 1-30 of 51 in total

View Taxonomy