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L2_039_239G1_scaffold_800

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_800_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


2..1540
DNA (1539bp) protein (513aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Alanine--tRNA ligase n=2 Tax=Bifidobacterium breve RepID=F9XZK4_BIFBU
alaS; Alanyl-tRNA synthetase
L2_039_239G1_scaffold_800_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1549..2001
DNA (453bp) protein (151aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Putative Holliday junction resolvase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CTV0_BIFBR
RNAse H domain protein, YqgF family
L2_039_239G1_scaffold_800_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2014..3201
DNA (1188bp) protein (396aa)
YceG family protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0D8_BIFBR
pabC; Hypothetical protein with aminodeoxychorismate lyase domain
YceG family protein {ECO:0000313|EMBL:ERI87502.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3303..3776)
DNA (474bp) protein (158aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=F6C9R2_BIFBA
putative TadV type IV secretion peptidase
Uncharacterized protein {ECO:0000313|EMBL:AEF27590.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_039_239G1_scaffold_800_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3825..5012
DNA (1188bp) protein (396aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Chorismate synthase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAN7_BIFBR
Chorismate synthase
L2_039_239G1_scaffold_800_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5047..6669
DNA (1623bp) protein (541aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CTZ8_BIFBR
3-dehydroquinate synthase {ECO:0000313|EMBL:ERI87553.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6821..7267
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
3-dehydroquinate dehydratase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZL0_BIFBU
aroQ; 3-dehydroquinate dehydratase
L2_039_239G1_scaffold_800_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7387..9051
DNA (1665bp) protein (555aa)
pyrG; CTP synthase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
CTP synthase n=2 Tax=Bifidobacterium breve RepID=F9XZL1_BIFBU
L2_039_239G1_scaffold_800_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9212..10840
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAN2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI87549.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Hypothetical protein with ErfK/YbiS/YcfS/YnhG domain
L2_039_239G1_scaffold_800_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11019..12518
DNA (1500bp) protein (500aa)
FeS assembly protein SufB n=5 Tax=Bifidobacterium breve RepID=F6C9Q6_BIFBA
FeS assembly protein SufB
FeS assembly protein SufB {ECO:0000313|EMBL:AEF28049.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_039_239G1_scaffold_800_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12524..13759
DNA (1236bp) protein (412aa)
FeS assembly protein SufD n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0H8_BIFBR
FeS assembly protein SufD {ECO:0000313|EMBL:ERI87547.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
ATP-binding protein of ABC transporter system
L2_039_239G1_scaffold_800_12
Bifidobacterium saguini, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13785..14489
DNA (705bp) protein (235aa)
FeS assembly ATPase SufC {ECO:0000313|EMBL:KFI92347.1}; EC=3.6.3.44 {ECO:0000313|EMBL:KFI92347.1};; TaxID=1437607 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium saguini DSM 23967.;"
FeS assembly ATPase SufC n=6 Tax=Bifidobacterium breve RepID=F6C9Q4_BIFBA
FeS assembly protein SufC
L2_039_239G1_scaffold_800_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14658..15932
DNA (1275bp) protein (425aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Cysteine desulfurase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CSN4_BIFBR
Cysteine desulfurase/Selenocysteine lyase
L2_039_239G1_scaffold_800_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15944..16498
DNA (555bp) protein (185aa)
SUF system FeS assembly protein, NifU family n=5 Tax=Bifidobacterium breve RepID=F6C9Q2_BIFBA
IscU protein
NifU family SUF system FeS assembly protein {ECO:0000313|EMBL:EPD75165.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_039_239G1_scaffold_800_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16506..17090
DNA (585bp) protein (195aa)
Uncharacterized protein n=4 Tax=Bifidobacterium breve RepID=F6C9Q1_BIFBA
Hypothetical protein with DUF59 domain
Uncharacterized protein {ECO:0000313|EMBL:ERI87543.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17209..18453)
DNA (1245bp) protein (415aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0H3_BIFBR
Glucose-1-phosphate adenylyltransferase
L2_039_239G1_scaffold_800_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18657..19535)
DNA (879bp) protein (293aa)
SpoU rRNA methylase family protein n=5 Tax=Bifidobacterium breve RepID=F9XZM0_BIFBU
SpoU rRNA methylase family protein
RNA methyltransferase, TrmH family {ECO:0000313|EMBL:ERI87540.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19742..20575
DNA (834bp) protein (278aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9XZM1_BIFBU
Hypothetical protein with DUF558 domain, RNA methyl transferase
L2_039_239G1_scaffold_800_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20686..21024
DNA (339bp) protein (113aa)
Histidine triad domain protein n=6 Tax=Bifidobacterium breve RepID=F6C9P7_BIFBA
HIT family protein
Histidine triad domain protein {ECO:0000313|EMBL:AEF27661.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L2_039_239G1_scaffold_800_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21043..22227
DNA (1185bp) protein (395aa)
phosphate starvation protein PhoH n=1 Tax=Bifidobacterium breve RepID=UPI00031D30A9
PhoH protein
PhoH protein {ECO:0000313|EMBL:AHJ21089.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_800_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22217..22768
DNA (552bp) protein (184aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Endoribonuclease YbeY n=5 Tax=Bifidobacterium breve RepID=F9XZM4_BIFBU
Conserved hypothetical protein in uncharacterized protein family UPF0054
L2_039_239G1_scaffold_800_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22793..24226
DNA (1434bp) protein (478aa)
CBS domain protein n=3 Tax=Bifidobacterium breve RepID=U2CSM4_BIFBR
Conserved hypothetical membrane spanning protein with CBS and transporter associated domains
Conserved hypothetical membrane spanning protein with CBS and transporter associated domains {ECO:0000313|EMBL:ABE95603.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L2_039_239G1_scaffold_800_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24228..25235
DNA (1008bp) protein (336aa)
GTPase Era n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CAL7_BIFBR
GTP-binding protein
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25309..27342)
DNA (2034bp) protein (678aa)
AMP-binding enzyme n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CTX7_BIFBR
fadD2; Long-chain-fatty-acid--CoA ligase
AMP-binding enzyme {ECO:0000313|EMBL:ERI87533.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L2_039_239G1_scaffold_800_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27735..28898
DNA (1164bp) protein (388aa)
Putative NAD(P)(+) transhydrogenase, alpha subunit n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0G5_BIFBR
Putative NAD(P)(+) transhydrogenase, alpha subunit {ECO:0000313|EMBL:ERI87532.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
pntA1; alanine dehydrogenase/PNT domain protein
L2_039_239G1_scaffold_800_26
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28914..29219
DNA (306bp) protein (102aa)
NAD(P) transhydrogenase alpha subunit n=4 Tax=Bifidobacterium breve RepID=F9XZM9_BIFBU
NAD(P) transhydrogenase alpha subunit
NAD(P) transhydrogenase alpha subunit {ECO:0000313|EMBL:AHJ21095.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_800_27
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29219..30643
DNA (1425bp) protein (475aa)
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
NAD(P) transhydrogenase subunit beta n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZYM7_BIFBR
NAD(P) transhydrogenase subunit beta
L2_039_239G1_scaffold_800_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30750..32033)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZFM0_BIFBR
Permease MFS superfamily
Uncharacterized protein {ECO:0000313|EMBL:EPD75151.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L2_039_239G1_scaffold_800_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


32432..33061
DNA (630bp) protein (210aa)
50S ribosomal protein L25 n=6 Tax=Bifidobacterium breve RepID=F6C9N9_BIFBA
LSU ribosomal protein L25P
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L2_039_239G1_scaffold_800_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33285..33662
DNA (378bp) protein (126aa)
ilvE; Branched-chain amino acid aminotransferase (EC:2.6.1.42)
Branched-chain amino acid aminotransferase {ECO:0000313|EMBL:BAQ99926.1}; Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:EFE89496.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EFE89496.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Branched-chain-amino-acid transaminase n=6 Tax=Bifidobacterium breve RepID=F6C9N8_BIFBA
Displaying 30 items

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