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L2_039_239G1_scaffold_836

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_836_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..90
DNA (90bp) protein (30aa)
tRNA methylthiotransferase YqeV n=2 Tax=Clostridium RepID=B6FJY8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23568.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_836_2
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

148..411
DNA (264bp) protein (88aa)
UPF0297 protein CLONEX_00429 n=2 Tax=Clostridium RepID=B6FJY7_9CLOT
UPF0297 protein CLONEX_00429 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L2_039_239G1_scaffold_836_3
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

419..850
DNA (432bp) protein (144aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Putative Holliday junction resolvase n=2 Tax=Clostridium RepID=B6FJY6_9CLOT
conserved hypothetical protein TIGR00250
L2_039_239G1_scaffold_836_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

877..1137
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJY5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23571.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Protein of unknown function (DUF1292).
L2_039_239G1_scaffold_836_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1165..1632
DNA (468bp) protein (156aa)
Transcriptional regulator, Fur family n=2 Tax=Clostridium RepID=B6FJY4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23572.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Fe2+/Zn2+ uptake regulation proteins
L2_039_239G1_scaffold_836_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1652..3316
DNA (1665bp) protein (555aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23573.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_836_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3389..4039
DNA (651bp) protein (217aa)
O-methyltransferase n=2 Tax=Clostridium RepID=B6FJY2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23574.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted O-methyltransferase
L2_039_239G1_scaffold_836_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4043..5269
DNA (1227bp) protein (409aa)
Collagenase and related proteases (EC:3.4.-.-)
Peptidase, U32 family n=2 Tax=Clostridium RepID=B6FJY1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23575.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_836_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5299..5916)
DNA (618bp) protein (206aa)
RNA polymerase sigma factor n=1 Tax=Clostridium nexile CAG:348 RepID=R6PYQ9_9CLOT
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
RNA polymerase sigma-28 subunit SigK
L2_039_239G1_scaffold_836_10
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6128..7654
DNA (1527bp) protein (509aa)
Mg chelatase-like protein n=2 Tax=Clostridium RepID=B6FJX8_9CLOT
Mg chelatase-like protein {ECO:0000313|EMBL:EEA83672.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Mg chelatase-related protein
L2_039_239G1_scaffold_836_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7659..8735
DNA (1077bp) protein (359aa)
DNA protecting protein DprA n=2 Tax=Clostridium RepID=B6FJX7_9CLOT
DNA protecting protein DprA {ECO:0000313|EMBL:EEA83671.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
DNA protecting protein DprA
L2_039_239G1_scaffold_836_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8762..10846
DNA (2085bp) protein (695aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA topoisomerase I (EC:5.99.1.2)
DNA topoisomerase 1 n=2 Tax=Clostridium RepID=B6FJX6_9CLOT
L2_039_239G1_scaffold_836_13
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10967..11749
DNA (783bp) protein (261aa)
GTP-sensing transcriptional pleiotropic repressor CodY n=2 Tax=Clostridium RepID=B6FJX5_9CLOT
GTP-sensing transcriptional pleiotropic repressor CodY {ECO:0000256|HAMAP-Rule:MF_00621, ECO:0000256|SAAS:SAAS00044533}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Pleiotropic transcriptional repressor
L2_039_239G1_scaffold_836_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11808..12137
DNA (330bp) protein (110aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJX4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23581.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_836_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12221..12505
DNA (285bp) protein (95aa)
10 kDa chaperonin n=2 Tax=Clostridium RepID=B6FJX3_9CLOT
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Co-chaperonin GroES (HSP10)
L2_039_239G1_scaffold_836_16
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12533..14155
DNA (1623bp) protein (541aa)
60 kDa chaperonin n=3 Tax=Clostridium RepID=B6FJX2_9CLOT
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
chaperonin GroL
L2_039_239G1_scaffold_836_17
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14295..14783
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJX1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23584.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_836_18
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14926..16233
DNA (1308bp) protein (436aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Clostridium RepID=B6FJX0_9CLOT
L2_039_239G1_scaffold_836_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16275..16418
DNA (144bp) protein (48aa)
Inosine-5'-monophosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928}; Short=IMP dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPD {ECO:0000256|HAMAP-Rule:MF_01964};; Short=IMPDH {ECO:0000256|HAMAP-Rule:MF_01964};; EC=1.1.1.205 {ECO:0000256|HAMAP-Rule:MF_01964, ECO:0000256|RuleBase:RU003928};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
inosine-5'-monophosphate dehydrogenase (EC:1.1.1.205)
Inosine-5'-monophosphate dehydrogenase n=2 Tax=Clostridium RepID=B6FJX0_9CLOT
L2_039_239G1_scaffold_836_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16515..17189
DNA (675bp) protein (225aa)
N-acetylmuramoyl-L-alanine amidase n=2 Tax=Clostridium RepID=B6FJV8_9CLOT
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EEA83652.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
N-acetylmuramoyl-L-alanine amidase
L2_039_239G1_scaffold_836_21
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17322..18218
DNA (897bp) protein (299aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6QNT3_9CLOT
Putative CRISPR-associated protein Csc1 {ECO:0000313|EMBL:EEA83651.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
yybE1; HTH-type transcriptional regulator YybE
L2_039_239G1_scaffold_836_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18265..19221
DNA (957bp) protein (319aa)
Sugar kinases, ribokinase family (EC:2.7.1.4)
Kinase, PfkB family n=2 Tax=Clostridium RepID=B6FJV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23598.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L2_039_239G1_scaffold_836_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19243..19752
DNA (510bp) protein (170aa)
HAD phosphatase, family IIIA {ECO:0000313|EMBL:EEA83649.1}; EC=3.1.3.- {ECO:0000313|EMBL:EEA83649.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
HAD phosphatase, family IIIA n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJV5_9CLOT
HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
L2_039_239G1_scaffold_836_24
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19947..21950
DNA (2004bp) protein (668aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PJ95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23600.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
NADH:flavin oxidoreductase
L2_039_239G1_scaffold_836_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22086..22445
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FJV2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23602.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L2_039_239G1_scaffold_836_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22471..23355)
DNA (885bp) protein (295aa)
LysR substrate binding domain protein n=2 Tax=Clostridium RepID=B6FJV1_9CLOT
LysR substrate binding domain protein {ECO:0000313|EMBL:EEA83645.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
transcriptional regulator, LysR family
L2_039_239G1_scaffold_836_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23539..24414
DNA (876bp) protein (292aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Shikimate dehydrogenase n=2 Tax=Clostridium RepID=B6FJV0_9CLOT
hypothetical protein
L2_039_239G1_scaffold_836_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24447..25634
DNA (1188bp) protein (396aa)
Transporter, major facilitator family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJU9_9CLOT
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEA83643.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Major Facilitator Superfamily.
L2_039_239G1_scaffold_836_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25660..26421
DNA (762bp) protein (254aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00214}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00214};; Type I DHQase {ECO:0000256|HAMAP-Rule:MF_00214}; Type I dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00214}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJU8_9CLOT
L2_039_239G1_scaffold_836_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26511..27023
DNA (513bp) protein (171aa)
TRAP transporter, DctQ-like membrane protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FJU7_9CLOT
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:EEA83641.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
TRAP-type C4-dicarboxylate transport system, small permease component
Displaying items 1-30 of 41 in total

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