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L2_039_239G1_scaffold_152

Search features with annotation key words

Displaying items 1-30 of 83 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_152_1
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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186..674
DNA (489bp) protein (163aa)
PTS system IIA component Glc family (TC 4.A.1) n=1 Tax=Clostridium sp. CAG:299 RepID=R6YZ41_9CLOT
PTS system IIA component Glc family (TC 4.A.1) {ECO:0000313|EMBL:CDD41363.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
PTS system IIA component, Glc family (TC 4.A.1)
L2_039_239G1_scaffold_152_2
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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688..960
DNA (273bp) protein (91aa)
Phosphotransferase system, HPr-related proteins n=2 Tax=Clostridium RepID=D6DJI0_CLOSC
Phosphotransferase system, HPr-related proteins
Phosphotransferase system, HPr-related proteins {ECO:0000313|EMBL:CBK77854.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L2_039_239G1_scaffold_152_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1055..2524
DNA (1470bp) protein (490aa)
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZK55_9CLOT
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CDD41361.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L2_039_239G1_scaffold_152_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2665..3432
DNA (768bp) protein (256aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z541_9CLOT
L2_039_239G1_scaffold_152_5
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3438..6167
DNA (2730bp) protein (910aa)
Small GTP-binding protein domain protein n=8 Tax=Clostridium RepID=N9VK06_9CLOT
Small GTP-binding protein domain protein {ECO:0000313|EMBL:ENZ60902.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
small GTP-binding protein domain
L2_039_239G1_scaffold_152_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6184..7014
DNA (831bp) protein (277aa)
RNA methyltransferase TrmH family n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z2Y7_9CLOT
RNA methyltransferase TrmH family {ECO:0000313|EMBL:CDD40515.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
rRNA methylases
L2_039_239G1_scaffold_152_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7125..8156
DNA (1032bp) protein (344aa)
Phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054336}; EC=2.3.1.n2 {ECO:0000256|HAMAP-Rule:MF_00019, ECO:0000256|SAAS:SAAS00054327};; Acyl-ACP phosphotransacylase {ECO:0000256|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000256|HAMAP-Rule:MF_00019}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHT3_9CLOT
fatty acid/phospholipid synthesis protein PlsX
L2_039_239G1_scaffold_152_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8146..8376
DNA (231bp) protein (77aa)
Acyl carrier protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWX9_9CLOT
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
acyl carrier protein
L2_039_239G1_scaffold_152_9
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8518..9222
DNA (705bp) protein (235aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
RNAse III (EC:3.1.26.3)
Ribonuclease 3 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAM0_9CLOT
L2_039_239G1_scaffold_152_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9230..12817
DNA (3588bp) protein (1196aa)
Chromosome partition protein Smc n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHT6_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
condensin subunit Smc
L2_039_239G1_scaffold_152_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12849..13787
DNA (939bp) protein (313aa)
Signal recognition particle receptor FtsY n=1 Tax=Clostridium sp. CAG:299 RepID=R6YWY3_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
signal recognition particle-docking protein FtsY
L2_039_239G1_scaffold_152_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13813..15054
DNA (1242bp) protein (414aa)
threonine dehydratase, medium form (EC:4.3.1.19)
Threonine ammonia-lyase {ECO:0000313|EMBL:EFE11579.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EFE11579.1};; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
Threonine dehydratase, medium form n=3 Tax=Clostridium RepID=D6DJI9_CLOSC
L2_039_239G1_scaffold_152_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15083..16339
DNA (1257bp) protein (419aa)
Chloride transporter ClC family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHU6_9CLOT
Chloride transporter ClC family {ECO:0000313|EMBL:CDD40536.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Chloride channel protein EriC
L2_039_239G1_scaffold_152_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16352..17686
DNA (1335bp) protein (445aa)
Cytosine deaminase and related metal-dependent hydrolases n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAN2_9CLOT
Cytosine deaminase and related metal-dependent hydrolases {ECO:0000313|EMBL:CDD40539.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Cytosine deaminase and related metal-dependent hydrolases
L2_039_239G1_scaffold_152_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17688..18620)
DNA (933bp) protein (311aa)
Sugar kinases ribokinase family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHV1_9CLOT
Sugar kinases ribokinase family {ECO:0000313|EMBL:CDD40541.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Sugar kinases, ribokinase family
L2_039_239G1_scaffold_152_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18742..20100
DNA (1359bp) protein (453aa)
Amidohydrolase n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD11_9CLOT
Amidohydrolase {ECO:0000313|EMBL:CDD40542.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
amidohydrolase
L2_039_239G1_scaffold_152_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20103..20324)
DNA (222bp) protein (74aa)
DNA-binding helix-turn-helix protein n=3 Tax=Clostridium symbiosum RepID=E9SKX5_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA94228.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Transcriptional regulator, Cro/CI family
L2_039_239G1_scaffold_152_18
unknown

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comp(20369..20950)
DNA (582bp) protein (194aa)

This feature has no annotations

L2_039_239G1_scaffold_152_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21352..21597
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40544.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_152_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21697..22482
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z312_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40545.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Protein of unknown function (DUF3298).
L2_039_239G1_scaffold_152_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22492..23211)
DNA (720bp) protein (240aa)
Acetyltransferase GNAT family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZHV5_9CLOT
Acetyltransferase GNAT family {ECO:0000313|EMBL:CDD40546.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Acetyltransferases
L2_039_239G1_scaffold_152_22
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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23537..24730
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036DA21E
Uncharacterized protein {ECO:0000313|EMBL:ENY97167.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
macrolide-efflux protein
L2_039_239G1_scaffold_152_23
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24821..25069
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N1U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS43503.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
Bacterial mobilisation protein (MobC).
L2_039_239G1_scaffold_152_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25450..25701
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z925_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD42695.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_239G1_scaffold_152_25
unknown

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26320..26493
DNA (174bp) protein (58aa)

This feature has no annotations

L2_039_239G1_scaffold_152_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26698..28797
DNA (2100bp) protein (700aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7AD19_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD40552.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_239G1_scaffold_152_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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28879..29220
DNA (342bp) protein (114aa)
UPF0122 protein BN593_01477 n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZAP2_9CLOT
UPF0122 protein BN593_01477 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_152_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29257..30615
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z336_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
signal recognition particle protein
L2_039_239G1_scaffold_152_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


30704..30943
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:299 RepID=R6YX26_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
SSU ribosomal protein S16P
L2_039_239G1_scaffold_152_30
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31028..31255
DNA (228bp) protein (76aa)
UPF0109 protein CL3_25600 n=5 Tax=Clostridiales RepID=D4MSD7_9FIRM
RNA-binding protein (KH domain)
UPF0109 protein CLS_25270 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
Displaying items 1-30 of 83 in total

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