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L2_039_239G1_scaffold_458

Search features with annotation key words

Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_239G1_scaffold_458_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1728)
DNA (1728bp) protein (576aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GPV3_CLOSY
L2_039_239G1_scaffold_458_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1753..2235)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSL9_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
transcription elongation factor GreA
L2_039_239G1_scaffold_458_3
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2426..3445)
DNA (1020bp) protein (340aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD76_9CLOT
tRNA-U20-dihydrouridine synthase
L2_039_239G1_scaffold_458_4
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3414..3818)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL38_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44079.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_5
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3912..4886)
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Clostridium sp. CAG:299 RepID=R7ANC4_9CLOT
L2_039_239G1_scaffold_458_6
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4954..8433)
DNA (3480bp) protein (1160aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III catalytic subunit DnaE type n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSL6_9CLOT
L2_039_239G1_scaffold_458_7
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8591..8845)
DNA (255bp) protein (85aa)
Phosphotransferase System HPr (HPr) Family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD72_9CLOT
Phosphotransferase System HPr (HPr) Family {ECO:0000313|EMBL:CDD44075.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Phosphotransferase System HPr (HPr) Family
L2_039_239G1_scaffold_458_8
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8835..9839)
DNA (1005bp) protein (335aa)
Putative sporulation transcription regulator WhiA n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL33_9CLOT
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_9
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9841..10722)
DNA (882bp) protein (294aa)
UPF0042 nucleotide-binding protein BN500_01695 n=1 Tax=Clostridium sp. CAG:149 RepID=R5LWZ9_9CLOT
Nucleotide-binding protein BN500_01695 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
Predicted P-loop-containing kinase
L2_039_239G1_scaffold_458_10
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10726..11700)
DNA (975bp) protein (325aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSL4_9CLOT
L2_039_239G1_scaffold_458_11
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11792..12721)
DNA (930bp) protein (310aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
HPr kinase/phosphorylase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD67_9CLOT
HPr kinase
L2_039_239G1_scaffold_458_12
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12798..14663)
DNA (1866bp) protein (622aa)
UvrABC system protein C n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL29_9CLOT
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
excinuclease ABC, C subunit
L2_039_239G1_scaffold_458_13
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14651..15421)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z704_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44068.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Protein of unknown function (DUF1653).
L2_039_239G1_scaffold_458_14
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15624..17105
DNA (1482bp) protein (494aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7ANB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44067.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_15
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17226..19364)
DNA (2139bp) protein (713aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSL0_9CLOT
L2_039_239G1_scaffold_458_16
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19557..19844
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44065.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_17
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19959..20933
DNA (975bp) protein (325aa)
Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins (EC:1.97.1.4)
Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating proteins n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL24_9CLOT
Uncharacterized Fe-S protein PflX homolog of pyruvate formate lyase activating proteins {ECO:0000313|EMBL:CDD44064.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_239G1_scaffold_458_18
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21604..22572
DNA (969bp) protein (323aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z700_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44063.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_19
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22532..22957)
DNA (426bp) protein (142aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:299 RepID=R7ANB4_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD44062.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_20
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22957..23733)
DNA (777bp) protein (259aa)
Uncharacterized conserved protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSK6_9CLOT
Uncharacterized conserved protein {ECO:0000313|EMBL:CDD44061.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_21
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23818..25683)
DNA (1866bp) protein (622aa)
Ferrous iron transporter B n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZD61_9CLOT
Ferrous iron transporter B {ECO:0000313|EMBL:CDD44060.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
ferrous iron transport protein B
L2_039_239G1_scaffold_458_22
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25667..25954)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44059.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Fe2+ transport system protein A
L2_039_239G1_scaffold_458_23
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25963..27963)
DNA (2001bp) protein (667aa)
UvrABC system protein B n=1 Tax=Clostridium sp. CAG:299 RepID=R7ANB2_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
excinuclease ABC, B subunit
L2_039_239G1_scaffold_458_24
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28246..29547)
DNA (1302bp) protein (434aa)
Site-specific recombinase phage integrase family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSK3_9CLOT
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CDD44056.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_25
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29541..30542)
DNA (1002bp) protein (334aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44054.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
integrase
L2_039_239G1_scaffold_458_26
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30749..30964)
DNA (216bp) protein (72aa)
Putative prophage LambdaBa04 DNA binding protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZSJ9_9CLOT
Putative prophage LambdaBa04 DNA binding protein {ECO:0000313|EMBL:CDD44051.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
L2_039_239G1_scaffold_458_27
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31522..32148
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZL13_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44049.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
hypothetical protein
L2_039_239G1_scaffold_458_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32132..33043
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:299 RepID=R6Z6Z0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD44048.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
Domain of unknown function (DUF1814).
L2_039_239G1_scaffold_458_29
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33280..34491)
DNA (1212bp) protein (404aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium sp. CAG:299 RepID=R7ANA4_9CLOT
LL-diaminopimelate aminotransferase
Displaying 29 items

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