ggKbase home page

L2_039_362G1_scaffold_30

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_30_1
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..511)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JSU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60881.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L2_039_362G1_scaffold_30_2
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(557..1486)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECZ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG30646.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L2_039_362G1_scaffold_30_3
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1512..2258)
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JDN6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60883.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L2_039_362G1_scaffold_30_4
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2277..2894)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JHV9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB60885.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L2_039_362G1_scaffold_30_5
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2878..3126)
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N9H4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDF09405.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
hypothetical protein
L2_039_362G1_scaffold_30_6
unknown

Not on your lists

comp(3093..3359)
DNA (267bp) protein (89aa)

This feature has no annotations

L2_039_362G1_scaffold_30_7
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3356..4081)
DNA (726bp) protein (242aa)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) n=1 Tax=Ruminococcus torques L2-14 RepID=D4M118_9FIRM
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Soluble lytic murein transglycosylase and related regulatory proteins (Some contain LysM/invasin domains) {ECO:0000313|EMBL:CBL24930.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L2_039_362G1_scaffold_30_8
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4217..4732)
DNA (516bp) protein (172aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCD2_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75878.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_039_362G1_scaffold_30_9
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4841..5242)
DNA (402bp) protein (134aa)
Transcriptional regulator, XRE family n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LTW0_CLOB8
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABR33790.1}; TaxID=290402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) (Clostridium; acetobutylicum).;"
L2_039_362G1_scaffold_30_10
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5244..5582
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale (strain ATCC 33656 / VPI 0990) RepID=C4ZCD7_EUBR3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR75883.1}; TaxID=515619 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale (strain ATCC 33656 / VPI 0990).;"
L2_039_362G1_scaffold_30_11
unknown

Not on your lists

5585..6502
DNA (918bp) protein (306aa)

This feature has no annotations

L2_039_362G1_scaffold_30_12
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6671..8389
DNA (1719bp) protein (573aa)
Site-specific recombinases, DNA invertase Pin homologs n=1 Tax=Coprococcus catus GD/7 RepID=D4J8N9_9FIRM
Site-specific recombinases, DNA invertase Pin homologs
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBK80710.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L2_039_362G1_scaffold_30_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8586..9656)
DNA (1071bp) protein (357aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A4_9FIRM
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
L2_039_362G1_scaffold_30_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9685..11415)
DNA (1731bp) protein (577aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48074.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_30_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11846..12937
DNA (1092bp) protein (364aa)
asd; aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A6_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EGJ48075.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_30_16
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13105..13992
DNA (888bp) protein (296aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A7_9FIRM
dihydrodipicolinate synthase
L2_039_362G1_scaffold_30_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14009..14764
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
dapB; 4-hydroxy-tetrahydrodipicolinate reductase (EC:1.17.1.-)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9A8_9FIRM
L2_039_362G1_scaffold_30_18
Desulfitobacterium dichloroeliminans, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14904..15107
DNA (204bp) protein (68aa)
Putative transcriptional regulator n=1 Tax=Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1) RepID=L0F184_DESDL
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA67589.1}; TaxID=871963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium dichloroeliminans (strain LMG P-21439 / DCA1).;"
L2_039_362G1_scaffold_30_19
unknown

Not on your lists

15109..15300
DNA (192bp) protein (64aa)

This feature has no annotations

L2_039_362G1_scaffold_30_20
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

15453..16199
DNA (747bp) protein (249aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2ZFS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL13265.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis
L2_039_362G1_scaffold_30_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16262..17491)
DNA (1230bp) protein (410aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
tyrS; tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC47_9FIRM
L2_039_362G1_scaffold_30_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17512..18381)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XC48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48082.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_30_23
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

comp(18834..19715)
DNA (882bp) protein (294aa)
L-serine dehydratase, iron-sulfur-dependent subunit alpha (EC:4.3.1.17)
L-serine ammonia-lyase n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HAX9_9FIRM
L-serine ammonia-lyase {ECO:0000313|EMBL:CCY26673.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
L2_039_362G1_scaffold_30_24
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19729..20388)
DNA (660bp) protein (220aa)
sdaA; L-serine dehydratase, iron-sulfur-dependent subunit beta (EC:4.3.1.17)
L-serine dehydratase, iron-sulfur-dependent, beta subunit n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VSM5_9CLOT
L-serine dehydratase, iron-sulfur-dependent, beta subunit {ECO:0000313|EMBL:EOQ35454.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L2_039_362G1_scaffold_30_25
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20415..21617)
DNA (1203bp) protein (401aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8VRT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ35455.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Na+/H+-dicarboxylate symporters
L2_039_362G1_scaffold_30_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21872..22372)
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X8Y4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47876.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_30_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22496..23137)
DNA (642bp) protein (214aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
upp; uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP9_9FIRM
L2_039_362G1_scaffold_30_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23152..23877)
DNA (726bp) protein (242aa)
Universal bacterial protein YeaZ n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP8_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EGJ47776.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
peptidase M22 family protein
L2_039_362G1_scaffold_30_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23942..24370)
DNA (429bp) protein (143aa)
YjeE family ATPase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP7_9FIRM
YjeE family ATPase {ECO:0000313|EMBL:EGJ47775.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L2_039_362G1_scaffold_30_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24496..25683
DNA (1188bp) protein (396aa)
Rod shape determining protein RodA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBP6_9FIRM
Rod shape determining protein RodA {ECO:0000313|EMBL:EGJ47774.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative cell division protein FtsW
Displaying items 1-30 of 68 in total

View Taxonomy