ggKbase home page

L2_039_362G1_scaffold_60

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_60_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..1544)
DNA (1542bp) protein (514aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6Q467_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CDC30505.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
hypothetical protein
L2_039_362G1_scaffold_60_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1902..2687)
DNA (786bp) protein (262aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGR9_9FIRM
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EFQ07512.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L2_039_362G1_scaffold_60_3
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2721..3446)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6QAA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC29974.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
L2_039_362G1_scaffold_60_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3436..3753)
DNA (318bp) protein (106aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ24_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99273.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4173..7412
DNA (3240bp) protein (1080aa)
ABC-type antimicrobial peptide transport system, ATPase component n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ23_9FIRM
ABC-type antimicrobial peptide transport system, ATPase component {ECO:0000313|EMBL:CBK99272.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
ABC-type antimicrobial peptide transport system, ATPase component
L2_039_362G1_scaffold_60_6
unknown

Not on your lists

7667..7774
DNA (108bp) protein (36aa)

This feature has no annotations

L2_039_362G1_scaffold_60_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7813..8820
DNA (1008bp) protein (336aa)
Transcriptional regulators n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ21_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBK99270.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8888..10225
DNA (1338bp) protein (446aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ20_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBK99269.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10312..11163
DNA (852bp) protein (284aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ19_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBK99268.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11163..12005
DNA (843bp) protein (281aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ18_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBK99267.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12024..13499
DNA (1476bp) protein (492aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBK99266.1}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207, ECO:0000313|EMBL:CBK99266.1};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
4-alpha-glucanotransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ17_9FIRM
L2_039_362G1_scaffold_60_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13825..14304
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ16_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99265.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14344..14673
DNA (330bp) protein (110aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ15_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK99264.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14744..16036)
DNA (1293bp) protein (431aa)
Galactokinase (EC:2.7.1.6)
Galactokinase {ECO:0000313|EMBL:CBK99263.1}; EC=2.7.1.6 {ECO:0000313|EMBL:CBK99263.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Galactokinase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ14_9FIRM
L2_039_362G1_scaffold_60_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16238..17101
DNA (864bp) protein (288aa)
AraC-type DNA-binding domain-containing proteins n=2 Tax=root RepID=D4JZ13_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBK99262.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L2_039_362G1_scaffold_60_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17116..18492
DNA (1377bp) protein (459aa)
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA m(5)U-1939 methyltransferase {ECO:0000313|EMBL:CBK99261.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBK99261.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
23S rRNA m(5)U-1939 methyltransferase n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JZ12_9FIRM
L2_039_362G1_scaffold_60_17
Clostridium sp. CAG:149, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18614..19894)
DNA (1281bp) protein (427aa)
Prophage LambdaBa02 site-specific recombinase phage integrase family n=1 Tax=Clostridium sp. CAG:149 RepID=R5LQT2_9CLOT
Prophage LambdaBa02 site-specific recombinase phage integrase family {ECO:0000313|EMBL:CCY81580.1}; TaxID=1262776 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:149.;"
prophage lambdaba04 site-specific recombinase phage integrase family
L2_039_362G1_scaffold_60_18
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20180..20695)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J144_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT26549.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
helix-turn-helix family protein
L2_039_362G1_scaffold_60_19
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20850..21074
DNA (225bp) protein (75aa)
Plasmid maintenance system antidote protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1M1H1_9CLOT
plasmid maintenance system antidote protein
Plasmid maintenance system antidote protein {ECO:0000313|EMBL:AGF59460.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L2_039_362G1_scaffold_60_20
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21124..23022
DNA (1899bp) protein (633aa)
Phage/plasmid primase, P4 family domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAK1_9CLOT
Phage/plasmid primase, P4 family domain protein {ECO:0000313|EMBL:EEG51631.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
phage/plasmid primase, P4 family, C-terminal domain
L2_039_362G1_scaffold_60_21
unknown

Not on your lists

23240..23587
DNA (348bp) protein (116aa)

This feature has no annotations

L2_039_362G1_scaffold_60_22
Oribacterium sinus, Oribacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23599..23793
DNA (195bp) protein (65aa)
DNA-binding helix-turn-helix protein n=1 Tax=Oribacterium sinus F0268 RepID=C2KWJ7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEJ51886.1}; TaxID=585501 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Oribacterium.;" source="Oribacterium sinus F0268.;"
Predicted transcriptional regulators
L2_039_362G1_scaffold_60_23
unknown

Not on your lists

23810..24070
DNA (261bp) protein (87aa)

This feature has no annotations

L2_039_362G1_scaffold_60_24
unknown

Not on your lists

24140..24388
DNA (249bp) protein (83aa)

This feature has no annotations

L2_039_362G1_scaffold_60_25
Desulfatibacillum alkenivorans, Desulfatibacillum, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24508..24870
DNA (363bp) protein (121aa)
Phage protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FKW9_DESAA
phage protein
Phage protein {ECO:0000313|EMBL:ACL04491.1}; Flags: Precursor;; TaxID=439235 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatibacillum.;" source="Desulfatibacillum alkenivorans (strain AK-01).;"
L2_039_362G1_scaffold_60_26
unknown

Not on your lists

24863..25393
DNA (531bp) protein (177aa)

This feature has no annotations

L2_039_362G1_scaffold_60_27
unknown

Not on your lists

25404..25598
DNA (195bp) protein (65aa)

This feature has no annotations

L2_039_362G1_scaffold_60_28
unknown

Not on your lists

25616..26350
DNA (735bp) protein (245aa)

This feature has no annotations

L2_039_362G1_scaffold_60_29
unknown

Not on your lists

26385..26567
DNA (183bp) protein (61aa)

This feature has no annotations

L2_039_362G1_scaffold_60_30

Not on your lists

26518..27534
DNA (1017bp) protein (339aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Lachnospiraceae bacterium COE1 RepID=R9KZI8_9FIRM
Uncultured bacterium extrachromosomal DNA RGI00099 {ECO:0000313|EMBL:CDL65604.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RNA polymerase sigma factor rpoD
Displaying items 1-30 of 52 in total

View Taxonomy