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L2_039_362G1_scaffold_251

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_251_1
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..636
DNA (636bp) protein (212aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:5.4.2.6)
Uncharacterized protein n=5 Tax=Clostridiales RepID=R5QA51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25535.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
L2_039_362G1_scaffold_251_2
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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787..2610
DNA (1824bp) protein (608aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5QTK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25536.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
hypothetical protein
L2_039_362G1_scaffold_251_3
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2691..4106)
DNA (1416bp) protein (472aa)
Amino acid carrier protein AlsT n=3 Tax=Clostridiales RepID=E5XIU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ25537.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
amino acid carrier protein
L2_039_362G1_scaffold_251_4
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4371..5837
DNA (1467bp) protein (489aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=2 Tax=Clostridiales RepID=F3ASL0_9FIRM
L2_039_362G1_scaffold_251_5
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5858..8077
DNA (2220bp) protein (740aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Primosomal protein N n=2 Tax=unclassified Lachnospiraceae RepID=E5XIU7_9FIRM
L2_039_362G1_scaffold_251_6
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8099..8599
DNA (501bp) protein (167aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=5 Tax=Clostridiales RepID=A5KNU9_9FIRM
L2_039_362G1_scaffold_251_7
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8596..9588
DNA (993bp) protein (331aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=5 Tax=Clostridiales RepID=A5KNU8_9FIRM
L2_039_362G1_scaffold_251_8
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9588..10958
DNA (1371bp) protein (457aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
ribosomal RNA small subunit methyltransferase RsmB (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KNU7_9FIRM
L2_039_362G1_scaffold_251_9
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11029..12096
DNA (1068bp) protein (356aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=5 Tax=Clostridiales RepID=A5KNU6_9FIRM
L2_039_362G1_scaffold_251_10
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12107..12850
DNA (744bp) protein (248aa)
Serine/threonine protein phosphatase (EC:3.1.3.16)
Protein phosphatase 2C n=5 Tax=Clostridiales RepID=A5KNU5_9FIRM
Protein phosphatase 2C {ECO:0000313|EMBL:EDK23843.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
L2_039_362G1_scaffold_251_11
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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12847..14907
DNA (2061bp) protein (687aa)
PASTA domain./Protein kinase domain. (EC:2.7.11.1)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_46FAA RepID=F3ASK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87966.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L2_039_362G1_scaffold_251_12
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14935..15834
DNA (900bp) protein (300aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=5 Tax=Clostridiales RepID=A5KNU3_9FIRM
L2_039_362G1_scaffold_251_13
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15837..16499
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=3 Tax=Clostridiales RepID=A5KNU2_9FIRM
L2_039_362G1_scaffold_251_14
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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16492..17145
DNA (654bp) protein (218aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine diphosphokinase n=5 Tax=Clostridiales RepID=A5KNU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18700.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L2_039_362G1_scaffold_251_15
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17461..17604
DNA (144bp) protein (48aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A5KNU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDK23838.1}; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
L2_039_362G1_scaffold_251_16
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17713..17925
DNA (213bp) protein (71aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=F3ASJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87961.1}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
L2_039_362G1_scaffold_251_17
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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18015..18533
DNA (519bp) protein (173aa)
Putative uncharacterized protein n=3 Tax=unclassified Lachnospiraceae RepID=E5XIV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18702.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
putative conjugative transposon proteinTn1549-like, CTn5-Orf2
L2_039_362G1_scaffold_251_18
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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18589..18930
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIV9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18703.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L2_039_362G1_scaffold_251_19
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19056..19391
DNA (336bp) protein (112aa)
Putative uncharacterized protein n=2 Tax=unclassified Lachnospiraceae RepID=E5XIW0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFV18704.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
L2_039_362G1_scaffold_251_20
Lachnospiraceae bacterium 8_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19542..20168
DNA (627bp) protein (209aa)
ABC-2 type transporter n=2 Tax=unclassified Lachnospiraceae RepID=E5XIW1_9FIRM
ABC-2 type transporter {ECO:0000313|EMBL:EFV18705.1}; TaxID=665951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 8_1_57FAA.;"
ABC-2 type transporter.
L2_039_362G1_scaffold_251_21
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20636..24121
DNA (3486bp) protein (1162aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5QC02_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ26108.1}; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
alkaline phosphatase-like protein
L2_039_362G1_scaffold_251_22
Lachnospiraceae bacterium 3_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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24365..25462
DNA (1098bp) protein (366aa)
Ribosome-binding ATPase YchF n=5 Tax=Clostridiales RepID=A5KNS7_9FIRM
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=665950 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_46FAA.;"
GTP-binding protein YchF
L2_039_362G1_scaffold_251_23
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25642..26499
DNA (858bp) protein (286aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=411460 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques ATCC 27756.;"
prolipoprotein diacylglyceryl transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=4 Tax=Clostridiales RepID=A5KNS6_9FIRM
L2_039_362G1_scaffold_251_24
Ruminococcus torques CAG:61, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26813..27946
DNA (1134bp) protein (378aa)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159};; TaxID=1263108 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus torques CAG:61.;"
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase n=5 Tax=Clostridiales RepID=A5KNS5_9FIRM
Displaying 24 items

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