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L2_039_362G1_scaffold_383

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_383_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..391
DNA (390bp) protein (130aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
lspA; lipoprotein signal peptidase (EC:3.4.23.36)
Lipoprotein signal peptidase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFV2_9FIRM
L2_039_362G1_scaffold_383_2
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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388..1305
DNA (918bp) protein (306aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
pseudouridine synthase (EC:5.4.99.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YF72_9FIRM
L2_039_362G1_scaffold_383_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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1491..2033
DNA (543bp) protein (181aa)
Stage V sporulation protein T n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD71_9FIRM
Stage V sporulation protein T {ECO:0000313|EMBL:EGJ46767.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
spoVT; transcriptional regulator spoVT
L2_039_362G1_scaffold_383_4
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2154..2663
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46144.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L2_039_362G1_scaffold_383_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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2797..3663
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEZ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46014.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
AraC family transcriptional regulator
L2_039_362G1_scaffold_383_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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3859..4491
DNA (633bp) protein (211aa)
cmpK; cytidylate kinase CmpK (EC:2.7.4.14)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46013.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_383_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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4524..5174
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46012.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted glutamine amidotransferases
L2_039_362G1_scaffold_383_8
Clostridium sp. CAG:914, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5231..6787
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:914 RepID=R7M5Z6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE95801.1}; TaxID=1262846 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:914.;"
peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin
L2_039_362G1_scaffold_383_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6964..8817
DNA (1854bp) protein (618aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFV7_9FIRM
L2_039_362G1_scaffold_383_10
unknown

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comp(8970..9080)
DNA (111bp) protein (37aa)

This feature has no annotations

L2_039_362G1_scaffold_383_11

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comp(9552..9896)
DNA (345bp) protein (115aa)
Integrase core domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJA9_9CLOT
Uncultured bacterium extrachromosomal DNA RGI01869 {ECO:0000313|EMBL:CDL66704.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
integrase catalytic subunit
L2_039_362G1_scaffold_383_12
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9921..10301)
DNA (381bp) protein (127aa)
Integrase core domain protein n=2 Tax=root RepID=A7VPX6_9CLOT
Integrase core domain protein {ECO:0000313|EMBL:EDO62481.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
transposase
L2_039_362G1_scaffold_383_13
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10391..10678)
DNA (288bp) protein (96aa)
Transposase (Fragment) n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EJA7_9CLOT
Transposase {ECO:0000313|EMBL:EEG28441.1}; Flags: Fragment;; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
putative transposase
L2_039_362G1_scaffold_383_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10840..11817)
DNA (978bp) protein (326aa)
pta; phosphate acetyltransferase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFE3_9FIRM
Phosphate acetyltransferase {ECO:0000313|EMBL:EGJ46163.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_383_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12049..12759
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46161.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative Xre family DNA-binding protein
L2_039_362G1_scaffold_383_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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12871..14679
DNA (1809bp) protein (603aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Elongation factor 4 n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YEH2_9FIRM
lepA; GTP-binding protein LepA
L2_039_362G1_scaffold_383_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15180..16358)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46532.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_383_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16351..16839)
DNA (489bp) protein (163aa)
Sigma-70 family RNA polymerase sigma factor n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEN3_9FIRM
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EGJ46533.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
RpoE; DNA-directed RNA polymerase sigma-24 subunit
L2_039_362G1_scaffold_383_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16963..18357)
DNA (1395bp) protein (465aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
asnS; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE38_9FIRM
L2_039_362G1_scaffold_383_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18586..20922)
DNA (2337bp) protein (779aa)
protein serine/threonine phosphatase (EC:3.1.3.16)
Stage II sporulation protein E n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE45_9FIRM
Stage II sporulation protein E {ECO:0000313|EMBL:EGJ46345.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L2_039_362G1_scaffold_383_21
unknown

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21544..21612
DNA (69bp) protein (23aa)
hypothetical protein
Displaying 21 items

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