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L2_039_362G1_scaffold_946

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_946_1
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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48..2684
DNA (2637bp) protein (879aa)
Outer membrane protein, OMP85 family n=3 Tax=root RepID=D1PDW1_9BACT
Putative outer membrane protein {ECO:0000313|EMBL:CDA66146.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
outer membrane protein/protective antigen OMA87
L2_039_362G1_scaffold_946_2
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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2696..3208
DNA (513bp) protein (171aa)
Outer membrane protein n=3 Tax=root RepID=D1PDW0_9BACT
Cationic outer membrane protein OmpH {ECO:0000313|EMBL:CDA66147.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
hypothetical protein
L2_039_362G1_scaffold_946_3
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3301..3786
DNA (486bp) protein (162aa)
Outer membrane protein n=2 Tax=Prevotella RepID=D1PDV9_9BACT
Cationic outer membrane protein OmpH {ECO:0000313|EMBL:CDA66148.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
outer membrane protein
L2_039_362G1_scaffold_946_4
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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3900..4298
DNA (399bp) protein (133aa)
Outer membrane protein n=2 Tax=Prevotella RepID=D1PDV8_9BACT
Putative cationic outer membrane protein OmpH {ECO:0000313|EMBL:CDA66149.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
outer membrane protein, OmpH-like protein
L2_039_362G1_scaffold_946_5
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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4295..5131
DNA (837bp) protein (279aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDV7_9BACT
L2_039_362G1_scaffold_946_6

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5162..5497
DNA (336bp) protein (112aa)
Ribosome-binding factor A n=2 Tax=Prevotella RepID=D1PDV6_9BACT
Uncultured bacterium extrachromosomal DNA RGI01300 {ECO:0000313|EMBL:CDL66423.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rbfA; ribosome-binding factor A
L2_039_362G1_scaffold_946_7
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5584..6813
DNA (1230bp) protein (410aa)
Efflux ABC transporter, permease protein n=2 Tax=Prevotella RepID=D1PDV5_9BACT
Putative membrane protein {ECO:0000313|EMBL:CDA66152.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
ABC-type transport system, involved in lipoprotein release, permease component
L2_039_362G1_scaffold_946_8
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6828..7400)
DNA (573bp) protein (191aa)
O-methyltransferase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDV4_9BACT
O-methyltransferase {ECO:0000313|EMBL:EFB35260.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
O-methyltransferase
L2_039_362G1_scaffold_946_9
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7430..7864)
DNA (435bp) protein (145aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
aroQ; 3-dehydroquinate dehydratase, type II (EC:4.2.1.10)
3-dehydroquinate dehydratase n=2 Tax=Prevotella RepID=D1PDV3_9BACT
L2_039_362G1_scaffold_946_10
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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7989..8945
DNA (957bp) protein (319aa)
Tyrosine recombinase XerC n=1 Tax=Prevotella copri CAG:164 RepID=R6BSD0_9BACT
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
xerD; tyrosine recombinase XerD
L2_039_362G1_scaffold_946_11
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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9063..10337
DNA (1275bp) protein (425aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
metK; methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDV1_9BACT
L2_039_362G1_scaffold_946_12
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10341..11366
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDV0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB35256.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
hypothetical protein
L2_039_362G1_scaffold_946_13
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

11373..12122
DNA (750bp) protein (250aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EFB35255.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EFB35255.1};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
hemD; uroporphyrinogen-III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=3 Tax=root RepID=D1PDU9_9BACT
L2_039_362G1_scaffold_946_14
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12144..12587
DNA (444bp) protein (148aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
Ribonuclease P protein component n=1 Tax=Prevotella copri CAG:164 RepID=R6BYS3_9BACT
Ribonuclease P protein component
L2_039_362G1_scaffold_946_15
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12584..12838
DNA (255bp) protein (85aa)
Putative membrane protein insertion efficiency factor n=2 Tax=Prevotella RepID=D1PDU7_9BACT
Putative membrane protein insertion efficiency factor {ECO:0000256|HAMAP-Rule:MF_00386, ECO:0000256|SAAS:SAAS00100919}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
conserved hypothetical protein YidD
L2_039_362G1_scaffold_946_16
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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12902..14203
DNA (1302bp) protein (434aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
Tyrosine--tRNA ligase n=2 Tax=root RepID=D1PDU6_9BACT
tyrosyl-tRNA synthetase
L2_039_362G1_scaffold_946_17
unknown

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comp(14274..14492)
DNA (219bp) protein (73aa)

This feature has no annotations

L2_039_362G1_scaffold_946_18
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

14579..15382
DNA (804bp) protein (268aa)
short-chain dehydrogenase/reductase SDR (EC:1.1.1.69)
Gluconate 5-dehydrogenase n=1 Tax=Prevotella copri CAG:164 RepID=R6CLL1_9BACT
Gluconate 5-dehydrogenase {ECO:0000313|EMBL:CDA66162.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
L2_039_362G1_scaffold_946_19
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(15490..15765)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=2 Tax=Prevotella RepID=D1PDU4_9BACT
DNA-binding protein HU {ECO:0000313|EMBL:EFB35250.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
hupB; DNA-binding protein HU-beta
L2_039_362G1_scaffold_946_20
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

15994..16932
DNA (939bp) protein (313aa)
peptidase, S54 family (EC:3.4.21.-)
Rhomboid family protein n=2 Tax=root RepID=R6BYS8_9BACT
Rhomboid family protein {ECO:0000313|EMBL:CDA66164.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
L2_039_362G1_scaffold_946_21
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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16939..17985
DNA (1047bp) protein (349aa)
Endonuclease/exonuclease/phosphatase family protein n=3 Tax=root RepID=D1PDU2_9BACT
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EFB35248.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
metal-dependent hydrolase
L2_039_362G1_scaffold_946_22
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18005..18997
DNA (993bp) protein (331aa)
Export membrane protein SecD n=1 Tax=Prevotella copri DSM 18205 RepID=D1PDU1_9BACT
Export membrane protein SecD {ECO:0000313|EMBL:EFB35247.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
export membrane protein SecD / protein-export membrane protein SecF multi-domain protein
Displaying 22 items

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