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L2_039_362G1_scaffold_66

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Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_66_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

142..954
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9V2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90465.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Domain of unknown function (DUF1848).
L2_039_362G1_scaffold_66_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1064..2362)
DNA (1299bp) protein (433aa)
Phage integrase family protein n=1 Tax=Clostridium difficile P28 RepID=T4P627_CLODI
Phage integrase family protein {ECO:0000313|EMBL:EQJ63225.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_039_362G1_scaffold_66_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2486..3136)
DNA (651bp) protein (217aa)
Helix-turn-helix family protein n=1 Tax=Clostridium difficile P28 RepID=T4P6A1_CLODI
Helix-turn-helix family protein {ECO:0000313|EMBL:EQJ63224.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_039_362G1_scaffold_66_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3318..3533
DNA (216bp) protein (72aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Clostridiales RepID=E5VQC0_9FIRM
DNA binding , excisionase family domain protein {ECO:0000313|EMBL:EQJ63223.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_039_362G1_scaffold_66_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3814..5220
DNA (1407bp) protein (469aa)
MobA/MobL family protein n=1 Tax=Clostridium difficile P28 RepID=T4P6J2_CLODI
MobA/MobL family protein {ECO:0000313|EMBL:EQJ63222.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_039_362G1_scaffold_66_6
unknown

Not on your lists

comp(5346..5486)
DNA (141bp) protein (47aa)
ABC transporter n=1 Tax=Bacillus acidiproducens RepID=UPI00035F4DC1
hypothetical protein
L2_039_362G1_scaffold_66_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5600..6826)
DNA (1227bp) protein (409aa)
H+ Antiporter protein n=3 Tax=Bacteria RepID=E5VQB8_9FIRM
Macrolide efflux A domain protein {ECO:0000313|EMBL:EQJ63221.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC transporter permease
L2_039_362G1_scaffold_66_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7192..7413)
DNA (222bp) protein (74aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4P623_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ63220.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L2_039_362G1_scaffold_66_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7358..7735)
DNA (378bp) protein (126aa)
Transposon-encoded TnpV family protein n=1 Tax=Clostridium difficile P28 RepID=T4P697_CLODI
Transposon-encoded TnpV family protein {ECO:0000313|EMBL:EQJ63219.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L2_039_362G1_scaffold_66_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8065..8634)
DNA (570bp) protein (190aa)
Putative bacteriocin transport accessory protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9V1_9FIRM
Putative bacteriocin transport accessory protein {ECO:0000313|EMBL:EEC90464.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_66_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8903..9562
DNA (660bp) protein (220aa)
DNA repair protein RadC n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9V0_9FIRM
DNA repair protein RadC {ECO:0000313|EMBL:EEC90463.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
radC; RadC protein
L2_039_362G1_scaffold_66_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9610..10446
DNA (837bp) protein (279aa)
Cell shape-determining protein MreC n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U9_9FIRM
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
rod shape-determining protein MreC
L2_039_362G1_scaffold_66_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10443..11009
DNA (567bp) protein (189aa)
Putative rod shape-determining protein MreD n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U8_9FIRM
Putative rod shape-determining protein MreD {ECO:0000313|EMBL:EEC90461.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_66_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11069..13645
DNA (2577bp) protein (859aa)
DNA-directed DNA polymerase {ECO:0000313|EMBL:EEC90460.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EEC90460.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA polymerase I (EC:2.7.7.7)
DNA-directed DNA polymerase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U7_9FIRM
L2_039_362G1_scaffold_66_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13645..14466
DNA (822bp) protein (274aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832};; EC=4.2.99.18 {ECO:0000256|SAAS:SAAS00054019};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
formamidopyrimidine-DNA glycosylase (fpg) (EC:3.2.2.23 4.2.99.18)
DNA-formamidopyrimidine glycosylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U6_9FIRM
L2_039_362G1_scaffold_66_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14439..15044
DNA (606bp) protein (202aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Dephospho-CoA kinase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U5_9FIRM
Dephospho-CoA kinase
L2_039_362G1_scaffold_66_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15034..16167
DNA (1134bp) protein (378aa)
Replication initiation and membrane attachment protein, DnaB/DnaD family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U4_9FIRM
Replication initiation and membrane attachment protein, DnaB/DnaD family {ECO:0000313|EMBL:EEC90457.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DnaD and phage-associated domain
L2_039_362G1_scaffold_66_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16167..17069
DNA (903bp) protein (301aa)
Putative primosomal protein DnaI n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9U3_9FIRM
Putative primosomal protein DnaI {ECO:0000313|EMBL:EEC90456.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA replication protein
L2_039_362G1_scaffold_66_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17148..18017
DNA (870bp) protein (290aa)
Fructose-1,6-bisphosphate aldolase, class II {ECO:0000313|EMBL:EEC90455.1}; EC=4.1.2.13 {ECO:0000313|EMBL:EEC90455.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist (EC:4.1.2.13)
Fructose-1,6-bisphosphate aldolase, class II n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Z4_9FIRM
L2_039_362G1_scaffold_66_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18080..19933
DNA (1854bp) protein (618aa)
Peptidase, S9A/B/C family, catalytic domain protein {ECO:0000313|EMBL:EEC90454.1}; EC=3.4.-.- {ECO:0000313|EMBL:EEC90454.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Peptidase, S9A/B/C family, catalytic domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Z3_9FIRM
dipeptidyl aminopeptidase/acylaminoacyl-peptidase
L2_039_362G1_scaffold_66_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20024..21292
DNA (1269bp) protein (423aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Z2_9FIRM
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L2_039_362G1_scaffold_66_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

21344..22705
DNA (1362bp) protein (454aa)
MATE efflux family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Z1_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEC90452.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
putative efflux protein, MATE family
L2_039_362G1_scaffold_66_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(22736..22960)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90451.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_66_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23087..23308
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90450.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_66_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23405..23827
DNA (423bp) protein (141aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC90449.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L2_039_362G1_scaffold_66_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23875..24345
DNA (471bp) protein (157aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC90449.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L2_039_362G1_scaffold_66_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24296..25084
DNA (789bp) protein (263aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC90449.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L2_039_362G1_scaffold_66_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

25163..26425
DNA (1263bp) protein (421aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y8_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EEC90449.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
diguanylate cyclase (GGDEF) domain
L2_039_362G1_scaffold_66_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26550..27509
DNA (960bp) protein (320aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEC90448.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted transcriptional regulators
L2_039_362G1_scaffold_66_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(27540..28775)
DNA (1236bp) protein (412aa)
Transporter, major facilitator family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C9Y6_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:EEC90447.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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