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L2_039_362G1_scaffold_264

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_264_1
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3..569)
DNA (567bp) protein (189aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Uracil-DNA glycosylase (EC:3.2.2.-)
Uracil-DNA glycosylase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA47_9FIRM
L2_039_362G1_scaffold_264_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

606..1766
DNA (1161bp) protein (387aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17 6.3.2.12)
Bifunctional protein FolC n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA46_9FIRM
Bifunctional protein FolC {ECO:0000313|EMBL:EEC90360.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_264_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1818..2249
DNA (432bp) protein (144aa)
Transcriptional regulator, MarR family n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA45_9FIRM
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EEC90359.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
transcriptional regulator, MarR family
L2_039_362G1_scaffold_264_4
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

2308..2925
DNA (618bp) protein (206aa)
Rubredoxin n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA44_9FIRM
Nitric oxide reductase NADH:FprA oxidoreductase {ECO:0000313|EMBL:CRH76567.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L2_039_362G1_scaffold_264_5
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(2940..3491)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA43_9FIRM
Folate ECF transporter S component FolT {ECO:0000313|EMBL:CRH76568.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L2_039_362G1_scaffold_264_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3712..5418)
DNA (1707bp) protein (569aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA42_9FIRM
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EEC90356.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
oligopeptide/dipeptide ABC transporter oligopeptide/dipeptide-binding protein
L2_039_362G1_scaffold_264_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5673..6644
DNA (972bp) protein (324aa)
Phosphate acetyltransferase {ECO:0000313|EMBL:EEC90355.1}; EC=2.3.1.8 {ECO:0000313|EMBL:EEC90355.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phosphotransacetylase (EC:2.3.1.8)
Phosphate acetyltransferase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA41_9FIRM
L2_039_362G1_scaffold_264_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6731..8071)
DNA (1341bp) protein (447aa)
Magnesium transporter n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA40_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Mg2+ transporter (mgtE)
L2_039_362G1_scaffold_264_9
Megamonas hypermegale, Megamonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(8426..9073)
DNA (648bp) protein (216aa)
Transcriptional regulator n=1 Tax=Megamonas hypermegale ART12/1 RepID=D4KHC3_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL05652.1}; TaxID=657316 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megamonas.;" source="Megamonas hypermegale ART12/1.;"
L2_039_362G1_scaffold_264_10
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9417..9680
DNA (264bp) protein (88aa)
AzlC protein n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J5U857_9FIRM
AzlC protein {ECO:0000313|EMBL:EJU20534.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
AzlC family protein
L2_039_362G1_scaffold_264_11
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10093..10395
DNA (303bp) protein (101aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6R0W3_9FIRM
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:CDC27927.1}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Branched-chain amino acid transport protein (AzlD).
L2_039_362G1_scaffold_264_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10418..11182)
DNA (765bp) protein (255aa)
Methyltransferase domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA38_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EEC90395.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
cheV2; chemotaxis protein CheV
L2_039_362G1_scaffold_264_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11320..12459
DNA (1140bp) protein (380aa)
GDSL-like protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA37_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EEC90394.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
lipolytic protein G-D-S-L family
L2_039_362G1_scaffold_264_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12596..13483
DNA (888bp) protein (296aa)
Oxidoreductase, NAD-binding domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA36_9FIRM
Oxidoreductase, NAD-binding domain protein {ECO:0000313|EMBL:EEC90393.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted dehydrogenases and related proteins
L2_039_362G1_scaffold_264_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

13480..14274
DNA (795bp) protein (265aa)
Glycosyl hydrolase family 25 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA35_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:EEC90392.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_264_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14443..14697
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90391.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_264_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14691..15566
DNA (876bp) protein (292aa)
Proline iminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; Short=PIP {ECO:0000256|PIRNR:PIRNR005539};; EC=3.4.11.5 {ECO:0000256|PIRNR:PIRNR005539};; Prolyl aminopeptidase {ECO:0000256|PIRNR:PIRNR005539}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Proline iminopeptidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA33_9FIRM
pepI; proline iminopeptidase
L2_039_362G1_scaffold_264_18
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


15900..16211
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA32_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S10P
L2_039_362G1_scaffold_264_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


16226..16918
DNA (693bp) protein (231aa)
50S ribosomal protein L3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA31_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L3P
L2_039_362G1_scaffold_264_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


16918..17547
DNA (630bp) protein (210aa)
50S ribosomal protein L4 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA30_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L4P
L2_039_362G1_scaffold_264_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


17547..17840
DNA (294bp) protein (98aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA29_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L23P
L2_039_362G1_scaffold_264_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


17899..18732
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA28_9FIRM
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L2P
L2_039_362G1_scaffold_264_23
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


18751..19026
DNA (276bp) protein (92aa)
30S ribosomal protein S19 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA27_9FIRM
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S19P
L2_039_362G1_scaffold_264_24
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


19041..19376
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA26_9FIRM
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L22P
L2_039_362G1_scaffold_264_25
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


19387..20199
DNA (813bp) protein (271aa)
30S ribosomal protein S3 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA25_9FIRM
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S3P
L2_039_362G1_scaffold_264_26
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


20199..20615
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA24_9FIRM
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L16P
L2_039_362G1_scaffold_264_27
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


20615..20815
DNA (201bp) protein (67aa)
50S ribosomal protein L29 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA23_9FIRM
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L29P
L2_039_362G1_scaffold_264_28
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


20829..21086
DNA (258bp) protein (86aa)
30S ribosomal protein S17 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA22_9FIRM
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
SSU ribosomal protein S17P
L2_039_362G1_scaffold_264_29
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


21105..21473
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA21_9FIRM
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
LSU ribosomal protein L14P
L2_039_362G1_scaffold_264_30
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


21487..21807
DNA (321bp) protein (107aa)
50S ribosomal protein L24 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA20_9FIRM
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
rplX; 50S ribosomal protein L24
Displaying items 1-30 of 39 in total

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