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L2_039_362G1_scaffold_432

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L2_039_362G1_scaffold_432_1
unknown

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2..73
DNA (72bp) protein (24aa)

This feature has no annotations

L2_039_362G1_scaffold_432_2
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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152..331
DNA (180bp) protein (60aa)
30S ribosomal protein S21 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAK8_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
rpsU; 30S ribosomal protein S21
L2_039_362G1_scaffold_432_3
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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374..1330
DNA (957bp) protein (319aa)
PhoH family protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAK9_9FIRM
PhoH family protein {ECO:0000313|EMBL:EEC90190.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
phosphate starvation inducible protein, PhoH-like protein
L2_039_362G1_scaffold_432_4
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1390..2124
DNA (735bp) protein (245aa)
Probable transcriptional regulatory protein EUBIFOR_01231 n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL0_9FIRM
Probable transcriptional regulatory protein EUBIFOR_01231 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
hypothetical protein
L2_039_362G1_scaffold_432_5
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2352..3659
DNA (1308bp) protein (436aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Histidine--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL1_9FIRM
hisS; histidyl-tRNA synthetase
L2_039_362G1_scaffold_432_6
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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3662..5398
DNA (1737bp) protein (579aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EEC90193.1}; EC=6.1.1.12 {ECO:0000313|EMBL:EEC90193.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Aspartate--tRNA ligase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL2_9FIRM
aspartyl-tRNA synthetase
L2_039_362G1_scaffold_432_7
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(5444..6025)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90195.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Predicted HD-superfamily hydrolase
L2_039_362G1_scaffold_432_8
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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6305..7129
DNA (825bp) protein (275aa)
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
tRNA pseudouridine 55 synthase (EC:5.4.99.12)
tRNA pseudouridine synthase B n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL5_9FIRM
L2_039_362G1_scaffold_432_9
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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7129..8106
DNA (978bp) protein (326aa)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
riboflavin kinase/FMN adenylyltransferase (EC:2.7.7.2 2.7.1.26)
Riboflavin biosynthesis protein RibF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL6_9FIRM
L2_039_362G1_scaffold_432_10
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8145..8474
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90198.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Protein of unknown function (DUF322).
L2_039_362G1_scaffold_432_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8509..9405
DNA (897bp) protein (299aa)
5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL8_9FIRM
5'-nucleotidase {ECO:0000313|EMBL:EEC90199.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_432_12
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9406..9783
DNA (378bp) protein (126aa)
Transcription antitermination factor NusB n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAL9_9FIRM
N utilization substance protein B homolog {ECO:0000256|SAAS:SAAS00057003}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
nusB; transcription antitermination factor NusB
L2_039_362G1_scaffold_432_13
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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9792..11111
DNA (1320bp) protein (440aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
xseA; Exodeoxyribonuclease 7 large subunit XseA (EC:3.1.11.6)
Exodeoxyribonuclease 7 large subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM0_9FIRM
L2_039_362G1_scaffold_432_14
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11113..11322
DNA (210bp) protein (70aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
xseB; exodeoxyribonuclease VII, small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM1_9FIRM
L2_039_362G1_scaffold_432_15
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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11309..12157
DNA (849bp) protein (283aa)
Geranylgeranyl pyrophosphate synthase (EC:2.5.1.10)
Polyprenyl synthetase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM2_9FIRM
Polyprenyl synthetase {ECO:0000313|EMBL:EEC90203.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L2_039_362G1_scaffold_432_16
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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12246..14108
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM3_9FIRM
1-deoxy-D-xylulose-5-phosphate synthase
L2_039_362G1_scaffold_432_17
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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14101..14832
DNA (732bp) protein (244aa)
Ribosomal RNA large subunit methyltransferase J {ECO:0000313|EMBL:EEC90205.1}; EC=2.1.1.- {ECO:0000313|EMBL:EEC90205.1};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Ribosomal RNA large subunit methyltransferase J n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM4_9FIRM
hemolysin TlyA family protein
L2_039_362G1_scaffold_432_18
Firmicutes bacterium M10-2, Firmicutes, Bacteria

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14937..16571
DNA (1635bp) protein (545aa)
DNA repair protein RecN n=2 Tax=Firmicutes bacterium M10-2 RepID=R9LQJ9_9FIRM
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1235796 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium M10-2.;"
DNA repair protein RecN
L2_039_362G1_scaffold_432_19
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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16564..17733
DNA (1170bp) protein (390aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM7_9FIRM
L2_039_362G1_scaffold_432_20
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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17730..18383
DNA (654bp) protein (218aa)
Methyltransferase small domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAM9_9FIRM
Methyltransferase small domain protein {ECO:0000313|EMBL:EEC90210.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
Methyltransferase
L2_039_362G1_scaffold_432_21
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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18403..19305
DNA (903bp) protein (301aa)
Tyrosine recombinase XerC n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAN0_9FIRM
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
xerD; site-specific recombinase XerD
L2_039_362G1_scaffold_432_22
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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19309..19968
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEC90212.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
ATPases involved in chromosome partitioning
Displaying 22 items

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